Gm35256 Gene Detail

Summary

• Symbol
  Gm35256
• Name
  predicted gene, 35256

• Feature Type
  lncRNA gene
• IDs
  MGI:5594415
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:71479125-71579220 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1589 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594415	lncRNA gene	Chr8:71479125-71579220 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220025576	lncRNA gene	Chr8:66537824-66636182 (+)
BALB/cJ	ENSMUSG00180029222	lncRNA gene	Chr8:66257350-66355820 (+)
C3H/HeJ	ENSMUSG00175022197	lncRNA gene	Chr8:66537335-66603446 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040448	lncRNA gene	Chr8:66018897-66125669 (+)
CBA/J	ENSMUSG00210035610	lncRNA gene	Chr8:66302853-66401184 (+)
DBA/2J	ENSMUSG00185013626	lncRNA gene	Chr8:72462500-72560833 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000043524	lncRNA gene	Chr8:74731717-74831120 (+)
LP/J	ENSMUSG00230035053	lncRNA gene	Chr8:76073977-76172305 (+)
NOD/ShiLtJ	ENSMUSG00190031418	lncRNA gene	Chr8:66219686-66319648 (+)
NZO/HlLtJ	ENSMUSG00225048378	lncRNA gene	Chr8:79474134-79572464 (+)
PWK/PhJ	ENSLUMG00010035201	lncRNA gene	Chr8:66191978-66291990 (+)
SPRET/EiJ	ENSMSPG00010041867	lncRNA gene	Chr8:67889476-67970870 (+)
WSB/EiJ	ENSIUOG00005027488	lncRNA gene	Chr8:67102799-67209285 (+)

Homology

• Gene Tree
  Gm35256
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm35256
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000110554 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110554	Ensembl Gene Model | MGI Sequence Detail	100096	C57BL/6J
transcript	ENSMUST00000212780	Ensembl | MGI Sequence Detail	3269	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm35256:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77836	Chr8:71479232-71479274 (+)	128 bp