Gm35248 Gene Detail

Summary

• Symbol
  Gm35248
• Name
  predicted gene, 35248

• Feature Type
  lncRNA gene
• IDs
  MGI:5594407
  NCBI Gene: 102638762
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr15:38299245-38343383 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1303 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594407	lncRNA gene	Chr15:38299021-38343389 (+)
129S1/SvImJ	ENSMUSG00200028163	lncRNA gene	Chr15:35315106-35345933 (+)
A/J	ENSMUSG00195036799	lncRNA gene	Chr15:35239019-35269890 (+)
AKR/J	ENSMUSG00220031004	lncRNA gene	Chr15:35152896-35183756 (+)
BALB/cJ	ENSMUSG00180033945	lncRNA gene	Chr15:35219680-35250529 (+)
C3H/HeJ	ENSMUSG00175028298	lncRNA gene	Chr15:35418356-35449188 (+)
C57BL/6NJ	ENSMUSG00215028481	lncRNA gene	Chr15:35226195-35257031 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010725	lncRNA gene	Chr15:35240714-35271595 (+)
CBA/J	ENSMUSG00210018365	lncRNA gene	Chr15:35332726-35363565 (+)
DBA/2J	ENSMUSG00185036390	lncRNA gene	Chr15:35313582-35344428 (+)
FVB/NJ	ENSMUSG00205033986	lncRNA gene	Chr15:35205416-35236284 (+)
JF1/MsJ	ENSUMUG00000036342	lncRNA gene	Chr15:35214013-35244557 (+)
LP/J	ENSMUSG00230012409	lncRNA gene	Chr15:38696171-38727004 (+)
NOD/ShiLtJ	ENSMUSG00190030644	lncRNA gene	Chr15:35283142-35313968 (+)
NZO/HlLtJ	ENSMUSG00225031896	lncRNA gene	Chr15:39004441-39035283 (+)
PWK/PhJ	ENSLUMG00010033547	lncRNA gene	Chr15:35363015-35393755 (+)
SPRET/EiJ	ENSMSPG00010013069	lncRNA gene	Chr15:36026840-36057675 (+)
WSB/EiJ	ENSIUOG00005033376	lncRNA gene	Chr15:35332162-35363012 (+)

Homology

• Gene Tree
  Gm35248
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  31
• Chemically induced (other)
  1
• Gene trapped
  30
• Genomic Mutations
  1 involving Gm35248
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  7

• Ensembl
  ENSMUSG00000115456 (Evidence)
• NCBI Gene
  102638762

Representative Sequences			Length	Strain/Species
genomic	102638762	NCBI Gene Model | MGI Sequence Detail	44139	C57BL/6J
transcript	XR_001781640	RefSeq | MGI Sequence Detail	2808	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm35248:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131113	Chr15:38299601-38299610 (+)	361 bp
Tssr131114	Chr15:38299752-38299758 (+)	510 bp
Tssr4579	Chr15:38300529-38300533 (+)	1,286 bp
Tssr131115	Chr15:38300636-38300637 (+)	1,392 bp
Tssr131116	Chr15:38301436-38301464 (+)	2,205 bp
Tssr4580	Chr15:38322446-38322453 (+)	23,205 bp