Gm35204 Gene Detail

Summary

• Symbol
  Gm35204
• Name
  predicted gene, 35204

• Feature Type
  lncRNA gene
• IDs
  MGI:5594363
  NCBI Gene: 102638709
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:45595888-45610144 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  576 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594363	lncRNA gene	Chr17:45574337-45610144 (+)
129S1/SvImJ	ENSMUSG00200028149	lncRNA gene	Chr17:40817489-40818607 (+)
A/J	ENSMUSG00195021960	lncRNA gene	Chr17:42314124-42315242 (+)
AKR/J	ENSMUSG00220036565	lncRNA gene	Chr17:41285749-41286867 (+)
BALB/cJ	ENSMUSG00180026546	lncRNA gene	Chr17:42052474-42053592 (+)
C3H/HeJ	ENSMUSG00175016158	lncRNA gene	Chr17:41366546-41367664 (+)
C57BL/6NJ	ENSMUSG00215037633	lncRNA gene	Chr17:40931032-40932150 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026237	lncRNA gene	Chr17:42108225-42109343 (+)
CBA/J	ENSMUSG00210039293	lncRNA gene	Chr17:41116276-41117394 (+)
DBA/2J	ENSMUSG00185030876	lncRNA gene	Chr17:44033377-44034495 (+)
FVB/NJ	ENSMUSG00205052651	lncRNA gene	Chr17:41600683-41601801 (+)
JF1/MsJ	ENSUMUG00000040238	lncRNA gene	Chr17:43642463-43643584 (+)
LP/J	ENSMUSG00230041811	lncRNA gene	Chr17:44918954-44920072 (+)
NOD/ShiLtJ	ENSMUSG00190017694	lncRNA gene	Chr17:41005285-41006403 (+)
NZO/HlLtJ	ENSMUSG00225043930	lncRNA gene	Chr17:47171668-47172786 (+)
PWK/PhJ	ENSLUMG00010035607	lncRNA gene	Chr17:40876262-40877383 (+)
SPRET/EiJ	ENSMSPG00010037240	lncRNA gene	Chr17:41101416-41102531 (+)
WSB/EiJ	ENSIUOG00005028562	lncRNA gene	Chr17:41978148-41979266 (+)

Homology

• Gene Tree
  Gm35204
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000121197 (Evidence)
• NCBI Gene
  102638709

Representative Sequences			Length	Strain/Species
genomic	102638709	NCBI Gene Model | MGI Sequence Detail	14257	C57BL/6J
transcript	XR_385594	RefSeq | MGI Sequence Detail	685	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35204:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144765	Chr17:45594116-45594146 (+)	-1,757 bp
Tssr144766	Chr17:45609023-45609041 (+)	13,144 bp
Tssr144767	Chr17:45609496-45609521 (+)	13,621 bp
Tssr144768	Chr17:45609549-45609560 (+)	13,667 bp