Gm35202 Gene Detail

Summary

• Symbol
  Gm35202
• Name
  predicted gene, 35202

• Feature Type
  lncRNA gene
• IDs
  MGI:5594361
  NCBI Gene: 108168745
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:35393536-35396104 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594361	lncRNA gene	Chr2:35391894-35396185 (+)
129S1/SvImJ	ENSMUSG00200048410	lncRNA gene	Chr2:32378973-32381532 (+)
A/J	ENSMUSG00195041056	lncRNA gene	Chr2:32481022-32483581 (+)
AKR/J	ENSMUSG00220044756	lncRNA gene	Chr2:32595940-32598499 (+)
BALB/cJ	ENSMUSG00180049314	lncRNA gene	Chr2:32495389-32497948 (+)
C3H/HeJ	ENSMUSG00175046266	lncRNA gene	Chr2:32461712-32464271 (+)
C57BL/6NJ	ENSMUSG00215047662	lncRNA gene	Chr2:32528879-32531438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005364	lincRNA gene	Chr2:31394110-31396700 (+)
CAST/EiJ	ENSTCUG00005018033	lncRNA gene	Chr2:32194690-32197234 (+)
CBA/J	ENSMUSG00210049781	lncRNA gene	Chr2:32534022-32536581 (+)
DBA/2J	ENSMUSG00185049364	lncRNA gene	Chr2:32393871-32396430 (+)
FVB/NJ	ENSMUSG00205040584	lncRNA gene	Chr2:32240203-32242762 (+)
JF1/MsJ	ENSUMUG00000014571	lncRNA gene	Chr2:32295267-32302269 (+)
LP/J	ENSMUSG00230046357	lncRNA gene	Chr2:34314307-34316866 (+)
NOD/ShiLtJ	ENSMUSG00190043386	lncRNA gene	Chr2:32495185-32497744 (+)
NZO/HlLtJ	ENSMUSG00225049890	lncRNA gene	Chr2:42077685-42080244 (+)
PWK/PhJ	ENSLUMG00010044055	lncRNA gene	Chr2:32389095-32396086 (+)
SPRET/EiJ	ENSMSPG00010043010	lncRNA gene	Chr2:33097859-33100412 (+)
WSB/EiJ	ENSIUOG00005043623	lncRNA gene	Chr2:32385146-32387705 (+)

Homology

• Gene Tree
  Gm35202
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000085668 (Evidence)
• NCBI Gene
  108168745

Representative Sequences			Length	Strain/Species
genomic	108168745	NCBI Gene Model | MGI Sequence Detail	2569	C57BL/6J
transcript	NR_168303	RefSeq | MGI Sequence Detail	721	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35202:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17473	Chr2:35393529-35393548 (+)	3 bp