Gm35172 Gene Detail

Summary

• Symbol
  Gm35172
• Name
  predicted gene, 35172
• Synonyms
  Gm43253

• Feature Type
  lncRNA gene
• IDs
  MGI:5594331
  NCBI Gene: 102638661
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:99656232-99658896 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  194 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594331	lncRNA gene	Chr5:99656208-99658940 (+)
129S1/SvImJ	ENSMUSG00200007112	lncRNA gene	Chr5:93392417-93395065 (+)
A/J	ENSMUSG00195036731	lncRNA gene	Chr5:92941816-92944464 (+)
AKR/J	ENSMUSG00220041387	lncRNA gene	Chr5:92411262-92413910 (+)
BALB/cJ	ENSMUSG00180037639	lncRNA gene	Chr5:93097964-93100612 (+)
C3H/HeJ	ENSMUSG00175034922	lncRNA gene	Chr5:95196232-95198880 (+)
C57BL/6NJ	ENSMUSG00215019958	lncRNA gene	Chr5:93040144-93042792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006103	lincRNA gene	Chr5:92460902-92466627 (+)
CAST/EiJ	ENSTCUG00005025605	lncRNA gene	Chr5:92443453-92446102 (+)
CBA/J	ENSMUSG00210036029	lncRNA gene	Chr5:93952997-93955645 (+)
DBA/2J	ENSMUSG00185038548	lncRNA gene	Chr5:96871296-96873944 (+)
FVB/NJ	ENSMUSG00205044926	lncRNA gene	Chr5:92848127-92850775 (+)
JF1/MsJ	ENSUMUG00000046085	lncRNA gene	Chr5:99884598-99887247 (+)
LP/J	ENSMUSG00230028281	lncRNA gene	Chr5:100934163-100936811 (+)
NOD/ShiLtJ	ENSMUSG00190029261	lncRNA gene	Chr5:92865348-92867996 (+)
NZO/HlLtJ	ENSMUSG00225013018	lncRNA gene	Chr5:108687193-108689841 (+)
PWK/PhJ	ENSLUMG00010017010	lncRNA gene	Chr5:91995859-91998508 (+)
SPRET/EiJ	ENSMSPG00010026915	lncRNA gene	Chr5:94896253-94898894 (+)
WSB/EiJ	ENSIUOG00005032994	lncRNA gene	Chr5:95596739-95599387 (+)

Homology

• Gene Tree
  Gm35172
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm35172
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000104753 (Evidence)
• NCBI Gene
  102638661

Representative Sequences			Length	Strain/Species
genomic	102638661	NCBI Gene Model | MGI Sequence Detail	2665	C57BL/6J
transcript	XR_880468	RefSeq | MGI Sequence Detail	1327	C57BL/6J

Other
Accession IDs

MGI:5663390

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm35172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47464	Chr5:99656232-99656251 (+)	10 bp