Gm35162 Gene Detail

Summary

• Symbol
  Gm35162
• Name
  predicted gene, 35162

• Feature Type
  lncRNA gene
• IDs
  MGI:5594321
  NCBI Gene: 102638649
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:89246199-89247749 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594321	lncRNA gene	Chr8:89246195-89247790 (-)
129S1/SvImJ	ENSMUSG00200017488	lncRNA gene	Chr8:83600683-83602234 (-)
A/J	ENSMUSG00195029630	lncRNA gene	Chr8:83973263-83974817 (-)
AKR/J	ENSMUSG00220042312	lncRNA gene	Chr8:83999684-84001233 (-)
BALB/cJ	ENSMUSG00180024404	lncRNA gene	Chr8:83804269-83805818 (-)
C3H/HeJ	ENSMUSG00175027632	lncRNA gene	Chr8:83912115-83913669 (-)
C57BL/6NJ	ENSMUSG00215028229	lncRNA gene	Chr8:83513524-83515078 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017700	lncRNA gene	Chr8:83372937-83374495 (-)
CBA/J	ENSMUSG00210037225	lncRNA gene	Chr8:83875049-83876612 (-)
DBA/2J	ENSMUSG00185038813	lncRNA gene	Chr8:89983639-89985202 (-)
FVB/NJ	ENSMUSG00205020599	lncRNA gene	Chr8:82930852-82932416 (-)
JF1/MsJ	ENSUMUG00000046823	lncRNA gene	Chr8:92307541-92309094 (-)
LP/J	ENSMUSG00230031882	lncRNA gene	Chr8:93597434-93598983 (-)
NOD/ShiLtJ	ENSMUSG00190016906	lncRNA gene	Chr8:83964877-83966426 (-)
NZO/HlLtJ	ENSMUSG00225040572	lncRNA gene	Chr8:97001510-97003059 (-)
PWK/PhJ	ENSLUMG00010041483	lncRNA gene	Chr8:83618005-83619543 (-)
SPRET/EiJ	ENSMSPG00010032166	lncRNA gene	Chr8:85550802-85552337 (-)
WSB/EiJ	ENSIUOG00005019913	lncRNA gene	Chr8:84695677-84697225 (-)

Homology

• Gene Tree
  Gm35162
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000121158 (Evidence)
• NCBI Gene
  102638649

Representative Sequences			Length	Strain/Species
genomic	102638649	NCBI Gene Model | MGI Sequence Detail	1551	C57BL/6J
transcript	NR_168470	RefSeq | MGI Sequence Detail	380	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35162:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82356	Chr8:89247728-89247774 (-)	-2 bp