Gm35154 Gene Detail

Summary

• Symbol
  Gm35154
• Name
  predicted gene, 35154

• Feature Type
  lncRNA gene
• IDs
  MGI:5594313
  NCBI Gene: 102638637
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:44475109-44565111 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2462 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594313	lncRNA gene	Chr10:44474716-44586134 (+)
129S1/SvImJ	ENSMUSG00200007331	lncRNA gene	Chr10:41372520-41463119 (+)
A/J	ENSMUSG00195002982	lncRNA gene	Chr10:41642697-41733296 (+)
AKR/J	ENSMUSG00220006527	lncRNA gene	Chr10:41328544-41419142 (+)
BALB/cJ	ENSMUSG00180012363	lncRNA gene	Chr10:41731926-41822528 (+)
C3H/HeJ	ENSMUSG00175010350	lncRNA gene	Chr10:41519377-41609989 (+)
C57BL/6NJ	ENSMUSG00215002382	lncRNA gene	Chr10:41269422-41360002 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008724	lncRNA gene	Chr10:41721592-41812038 (+)
CBA/J	ENSMUSG00210008469	lncRNA gene	Chr10:41415044-41505643 (+)
DBA/2J	ENSMUSG00185003223	lncRNA gene	Chr10:41566563-41657164 (+)
FVB/NJ	ENSMUSG00205004933	lncRNA gene	Chr10:41489498-41580111 (+)
JF1/MsJ	ENSUMUG00000031822	lncRNA gene	Chr10:41401396-41494649 (+)
LP/J	ENSMUSG00230006317	lncRNA gene	Chr10:43370498-43461091 (+)
NOD/ShiLtJ	ENSMUSG00190005512	lncRNA gene	Chr10:41694761-41785357 (+)
NZO/HlLtJ	ENSMUSG00225019623	lncRNA gene	Chr10:47656391-47746986 (+)
PWK/PhJ	ENSLUMG00010004703	lncRNA gene	Chr10:41481924-41572632 (+)
SPRET/EiJ	ENSMSPG00010013331	lncRNA gene	Chr10:42530487-42623964 (+)
WSB/EiJ	ENSIUOG00005015195	lncRNA gene	Chr10:41244636-41334834 (+)

Homology

• Gene Tree
  Gm35154
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm35154
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  3

• Ensembl
  ENSMUSG00000111535 (Evidence)
• NCBI Gene
  102638637

Representative Sequences			Length	Strain/Species
genomic	102638637	NCBI Gene Model | MGI Sequence Detail	90003	C57BL/6J
transcript	XR_001779767	RefSeq | MGI Sequence Detail	1190	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm35154:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93172	Chr10:44475812-44475864 (+)	729 bp
Tssr93173	Chr10:44475873-44475902 (+)	779 bp
Tssr93174	Chr10:44487817-44487837 (+)	12,718 bp
Tssr93175	Chr10:44487997-44488008 (+)	12,894 bp
Tssr93176	Chr10:44562243-44562247 (+)	87,136 bp