Gm35110 Gene Detail

Summary

• Symbol
  Gm35110
• Name
  predicted gene, 35110

• Feature Type
  lncRNA gene
• IDs
  MGI:5594269
  NCBI Gene: 102638580
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:46626671-46655401 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  941 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594269	lncRNA gene	Chr13:46626145-46655460 (-)
129S1/SvImJ	ENSMUSG00200036222	lncRNA gene	Chr13:43875893-43905119 (-)
A/J	ENSMUSG00195031781	lncRNA gene	Chr13:42936740-42965895 (-)
AKR/J	ENSMUSG00220009706	lncRNA gene	Chr13:42745594-42774880 (-)
BALB/cJ	ENSMUSG00180008906	lncRNA gene	Chr13:43243236-43272397 (-)
C3H/HeJ	ENSMUSG00175030905	lncRNA gene	Chr13:43207486-43236640 (-)
C57BL/6NJ	ENSMUSG00215008267	lncRNA gene	Chr13:43370689-43399950 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031573	lncRNA gene	Chr13:43274231-43303246 (-)
CBA/J	ENSMUSG00210027530	lncRNA gene	Chr13:43212960-43242115 (-)
DBA/2J	ENSMUSG00185033150	lncRNA gene	Chr13:44033032-44062186 (-)
FVB/NJ	ENSMUSG00205012492	lncRNA gene	Chr13:42990538-43019689 (-)
JF1/MsJ	ENSUMUG00000019538	lncRNA gene	Chr13:43548767-43577939 (-)
LP/J	ENSMUSG00230030952	lncRNA gene	Chr13:53345163-53374315 (-)
NOD/ShiLtJ	ENSMUSG00190012338	lncRNA gene	Chr13:43431655-43460809 (-)
NZO/HlLtJ	ENSMUSG00225036466	lncRNA gene	Chr13:47115225-47144468 (-)
PWK/PhJ	ENSLUMG00010021813	lncRNA gene	Chr13:42396205-42425452 (-)
SPRET/EiJ	ENSMSPG00010032123	lncRNA gene	Chr13:42500620-42529747 (-)
WSB/EiJ	ENSIUOG00005027698	lncRNA gene	Chr13:42583368-42612608 (-)

Homology

• Gene Tree
  Gm35110
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm35110
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000114752 (Evidence)
• NCBI Gene
  102638580

Representative Sequences			Length	Strain/Species
genomic	102638580	NCBI Gene Model | MGI Sequence Detail	28731	C57BL/6J
transcript	XR_382311	RefSeq | MGI Sequence Detail	1965	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm35110:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122343	Chr13:46656263-46656270 (-)	-866 bp