Gm35107 Gene Detail

Summary

• Symbol
  Gm35107
• Name
  predicted gene, 35107

• Feature Type
  lncRNA gene
• IDs
  MGI:5594266
  NCBI Gene: 102638574
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:47973632-47994945 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  538 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594266	lncRNA gene	ChrX:47955671-48099211 (+)
129S1/SvImJ	ENSMUSG00200038183	lncRNA gene	ChrX:32011163-32111300 (+)
A/J	ENSMUSG00195017374	lncRNA gene	ChrX:34612832-34712971 (+)
AKR/J	ENSMUSG00220039598	lncRNA gene	ChrX:31501226-31601352 (+)
BALB/cJ	ENSMUSG00180035408	lncRNA gene	ChrX:32342707-32442853 (+)
C3H/HeJ	ENSMUSG00175043665	lncRNA gene	ChrX:35361353-35461483 (+)
C57BL/6NJ	ENSMUSG00215047951	lncRNA gene	ChrX:32348677-32458643 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040116	lncRNA gene	ChrX:34422286-34524403 (+)
CBA/J	ENSMUSG00210043222	lncRNA gene	ChrX:32604892-32705025 (+)
DBA/2J	ENSMUSG00185035199	lncRNA gene	ChrX:43311275-43411408 (+)
FVB/NJ	ENSMUSG00205034152	lncRNA gene	ChrX:31287771-31387898 (+)
JF1/MsJ	ENSUMUG00000033175	lncRNA gene	ChrX:62370063-62468577 (+)
LP/J	ENSMUSG00230019782	lncRNA gene	ChrX:49843574-49943692 (+)
NOD/ShiLtJ	ENSMUSG00190041080	lncRNA gene	ChrX:31785245-31885374 (+)
NZO/HlLtJ	ENSMUSG00225043717	lncRNA gene	ChrX:55037214-55137336 (+)
PWK/PhJ	ENSLUMG00010041898	lncRNA gene	ChrX:32080128-32185522 (+)
SPRET/EiJ	ENSMSPG00010026429	lncRNA gene	ChrX:33670320-33789708 (+)
WSB/EiJ	ENSIUOG00005047893	lncRNA gene	ChrX:32884963-32999715 (+)

Homology

• Gene Tree
  Gm35107
  

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  3

• Ensembl
  ENSMUSG00000119964 (Evidence)
• NCBI Gene
  102638574

Representative Sequences			Length	Strain/Species
genomic	102638574	NCBI Gene Model | MGI Sequence Detail	21314	C57BL/6J
transcript	KY468247	GenBank | ENA | DDBJ | MGI Sequence Detail	484	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35107:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5619	ChrX:47973777-47973798 (+)	156 bp
Tssr160919	ChrX:47973823-47973835 (+)	197 bp
Tssr160920	ChrX:47973894-47973906 (+)	268 bp