Gm35071 Gene Detail

Summary

• Symbol
  Gm35071
• Name
  predicted gene, 35071

• Feature Type
  lncRNA gene
• IDs
  MGI:5594230
  NCBI Gene: 102638528
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:52493171-52500674 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594230	lncRNA gene	Chr12:52487797-52500674 (+)
129S1/SvImJ	ENSMUSG00200032250	lncRNA gene	Chr12:44434896-44435881 (+)
A/J	ENSMUSG00195019148	lncRNA gene	Chr12:47007318-47008302 (+)
AKR/J	ENSMUSG00220028539	lncRNA gene	Chr12:45056027-45057011 (+)
BALB/cJ	ENSMUSG00180006410	lncRNA gene	Chr12:45999066-46000050 (+)
C3H/HeJ	ENSMUSG00175012265	lncRNA gene	Chr12:49069617-49070601 (+)
C57BL/6NJ	ENSMUSG00215020195	lncRNA gene	Chr12:45409644-45410628 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009552	lncRNA gene	Chr12:45550918-45551903 (+)
CBA/J	ENSMUSG00210010181	lncRNA gene	Chr12:45543987-45544971 (+)
DBA/2J	ENSMUSG00185015009	lncRNA gene	Chr12:47527454-47528438 (+)
FVB/NJ	ENSMUSG00205015102	lncRNA gene	Chr12:45347122-45348106 (+)
JF1/MsJ	ENSUMUG00000010751	lncRNA gene	Chr12:51657896-51658881 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016728	lncRNA gene	Chr12:44534460-44535444 (+)
NZO/HlLtJ	ENSMUSG00225041171	lncRNA gene	Chr12:56696615-56697599 (+)
PWK/PhJ	ENSLUMG00010017117	lncRNA gene	Chr12:45732926-45733911 (+)
SPRET/EiJ	ENSMSPG00010016627	lncRNA gene	Chr12:47063556-47064539 (+)
WSB/EiJ	ENSIUOG00005003940	lncRNA gene	Chr12:45400471-45401456 (+)

Homology

• Gene Tree
  Gm35071
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm35071
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  3

• Ensembl
  ENSMUSG00000120607 (Evidence)
• NCBI Gene
  102638528

Representative Sequences			Length	Strain/Species
genomic	102638528	NCBI Gene Model | MGI Sequence Detail	7504	C57BL/6J
transcript	XR_872749	RefSeq | MGI Sequence Detail	3195	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35071:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113432	Chr12:52493667-52493690 (+)	508 bp