Gm35040 Gene Detail

Summary

• Symbol
  Gm35040
• Name
  predicted gene, 35040

• Feature Type
  lncRNA gene
• IDs
  MGI:5594199
  NCBI Gene: 102638488
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:79185760-79209781 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  647 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594199	lncRNA gene	Chr7:79185760-79209781 (+)
129S1/SvImJ	ENSMUSG00200034924	lncRNA gene	Chr7:65998911-66022980 (+)
A/J	ENSMUSG00195015978	lncRNA gene	Chr7:70414413-70438463 (+)
AKR/J	ENSMUSG00220041747	lncRNA gene	Chr7:63956416-63980471 (+)
BALB/cJ	ENSMUSG00180013910	lncRNA gene	Chr7:67139511-67163574 (+)
C3H/HeJ	ENSMUSG00175021976	lncRNA gene	Chr7:67910985-67935055 (+)
C57BL/6NJ	ENSMUSG00215034302	lncRNA gene	Chr7:67010587-67034615 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006576	lincRNA gene	Chr7:82086462-82111443 (+)
CAST/EiJ	ENSTCUG00005004228	lncRNA gene	Chr7:70463860-70487881 (+)
CBA/J	ENSMUSG00210024431	lncRNA gene	Chr7:67762271-67786330 (+)
DBA/2J	ENSMUSG00185048592	lncRNA gene	Chr7:72085006-72109064 (+)
FVB/NJ	ENSMUSG00205029668	lncRNA gene	Chr7:67651518-67675500 (+)
JF1/MsJ	ENSUMUG00000033475	lncRNA gene	Chr7:76746982-76771056 (+)
LP/J	ENSMUSG00230016045	lncRNA gene	Chr7:78175180-78199211 (+)
NOD/ShiLtJ	ENSMUSG00190020808	lncRNA gene	Chr7:67904119-67928183 (+)
NZO/HlLtJ	ENSMUSG00225042212	lncRNA gene	Chr7:76416792-76440824 (+)
PWK/PhJ	ENSLUMG00010018091	lncRNA gene	Chr7:66333368-66357539 (+)
SPRET/EiJ	ENSMSPG00010025838	lncRNA gene	Chr7:66750454-66774932 (+)
WSB/EiJ	ENSIUOG00005022837	lncRNA gene	Chr7:68252664-68276355 (+)

Homology

• Gene Tree
  Gm35040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm35040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000108616 (Evidence)
• NCBI Gene
  102638488

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108616	Ensembl Gene Model | MGI Sequence Detail	24022	C57BL/6J
transcript	ENSMUST00000206829	Ensembl | MGI Sequence Detail	5125	Not Applicable

References

• Summaries
  All 13

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm35040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67355	Chr7:79185745-79185809 (+)	17 bp
Tssr67356	Chr7:79185889-79185914 (+)	142 bp