Gm35025 Gene Detail

Summary

• Symbol
  Gm35025
• Name
  predicted gene, 35025

• Feature Type
  lncRNA gene
• IDs
  MGI:5594184
  NCBI Gene: 102638470
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:108700322-108703172 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594184	lncRNA gene	Chr9:108695530-108703444 (-)
129S1/SvImJ	ENSMUSG00200045134	lncRNA gene	Chr9:105896593-105898571 (-)
A/J	ENSMUSG00195044729	lncRNA gene	Chr9:105115788-105117767 (-)
AKR/J	ENSMUSG00220032566	lncRNA gene	Chr9:105503083-105505062 (-)
BALB/cJ	ENSMUSG00180035254	lncRNA gene	Chr9:105432247-105434226 (-)
C3H/HeJ	ENSMUSG00175045719	lncRNA gene	Chr9:105774510-105776489 (-)
C57BL/6NJ	ENSMUSG00215042353	lncRNA gene	Chr9:105753160-105755138 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013879	unclassified non-coding RNA gene	Chr9:104159213-104160367 (-)
CAST/EiJ	ENSTCUG00005034749	lncRNA gene	Chr9:105528621-105530600 (-)
CBA/J	ENSMUSG00210046326	lncRNA gene	Chr9:105628086-105630065 (-)
DBA/2J	ENSMUSG00185045453	lncRNA gene	Chr9:105783935-105785914 (-)
FVB/NJ	ENSMUSG00205050352	lncRNA gene	Chr9:105785320-105787299 (-)
JF1/MsJ	ENSUMUG00000055984	lncRNA gene	Chr9:105617395-105619374 (-)
LP/J	ENSMUSG00230050262	lncRNA gene	Chr9:105925402-105927380 (-)
NOD/ShiLtJ	ENSMUSG00190049483	lncRNA gene	Chr9:105422347-105424326 (-)
NZO/HlLtJ	ENSMUSG00225024443	lncRNA gene	Chr9:106157139-106159118 (-)
PWK/PhJ	ENSLUMG00010045151	lncRNA gene	Chr9:105581146-105583125 (-)
SPRET/EiJ	ENSMSPG00010048705	lncRNA gene	Chr9:107407272-107409266 (-)
WSB/EiJ	ENSIUOG00005048522	lncRNA gene	Chr9:104873536-104875514 (-)

Homology

• Gene Tree
  Gm35025
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000103785 (Evidence)
• NCBI Gene
  102638470

Representative Sequences			Length	Strain/Species
genomic	102638470	NCBI Gene Model | MGI Sequence Detail	2851	C57BL/6J
transcript	XR_871161	RefSeq | MGI Sequence Detail	2735	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35025:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91557	Chr9:108702013-108702054 (-)	1,138 bp