Gm34939 Gene Detail

Summary

• Symbol
  Gm34939
• Name
  predicted gene, 34939

• Feature Type
  lncRNA gene
• IDs
  MGI:5594098
  NCBI Gene: 102638354
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:99600545-99601857 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594098	lncRNA gene	Chr15:99599288-99601857 (-)
129S1/SvImJ	ENSMUSG00200052490	lncRNA gene	Chr15:96803507-96804819 (-)
A/J	ENSMUSG00195047232	lncRNA gene	Chr15:96670284-96671596 (-)
AKR/J	ENSMUSG00220050418	lncRNA gene	Chr15:96677082-96678394 (-)
BALB/cJ	ENSMUSG00180047220	lncRNA gene	Chr15:96580344-96581656 (-)
C3H/HeJ	ENSMUSG00175046919	lncRNA gene	Chr15:96850275-96851587 (-)
C57BL/6NJ	ENSMUSG00215051350	lncRNA gene	Chr15:96638963-96640275 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048096	lncRNA gene	Chr15:96120487-96121799 (-)
CBA/J	ENSMUSG00210033275	lncRNA gene	Chr15:96637276-96638588 (-)
DBA/2J	ENSMUSG00185044821	lncRNA gene	Chr15:96683482-96684794 (-)
FVB/NJ	ENSMUSG00205047302	lncRNA gene	Chr15:96387946-96389258 (-)
JF1/MsJ	ENSUMUG00000057263	lncRNA gene	Chr15:96137816-96139128 (-)
LP/J	ENSMUSG00230041983	lncRNA gene	Chr15:100026875-100028187 (-)
NOD/ShiLtJ	ENSMUSG00190050028	lncRNA gene	Chr15:96653703-96655015 (-)
NZO/HlLtJ	ENSMUSG00225043236	lncRNA gene	Chr15:100275822-100277134 (-)
PWK/PhJ	ENSLUMG00010050904	lncRNA gene	Chr15:96358553-96359865 (-)
SPRET/EiJ	ENSMSPG00010049982	lncRNA gene	Chr15:98163542-98164853 (-)
WSB/EiJ	ENSIUOG00005042737	lncRNA gene	Chr15:96764010-96765322 (-)

Homology

• Gene Tree
  Gm34939
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34939
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000116250 (Evidence)
• NCBI Gene
  102638354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116250	Ensembl Gene Model | MGI Sequence Detail	1313	C57BL/6J
transcript	ENSMUST00000229686	Ensembl | MGI Sequence Detail	739	Not Applicable
polypeptide	Q921G0	UniProt | EBI | MGI Sequence Detail	98	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34939:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136387	Chr15:99601671-99601690 (-)	176 bp