Gm34917 Gene Detail

Summary

• Symbol
  Gm34917
• Name
  predicted gene, 34917

• Feature Type
  lncRNA gene
• IDs
  MGI:5594076
  NCBI Gene: 102638326
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:44416675-44435068 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594076	lncRNA gene	Chr17:44416675-44435156 (+)
129S1/SvImJ	ENSMUSG00200052271	lncRNA gene	Chr17:39625661-39637839 (+)
A/J	ENSMUSG00195022792	lncRNA gene	Chr17:41118163-41130331 (+)
AKR/J	ENSMUSG00220052744	lncRNA gene	Chr17:40094997-40107219 (+)
BALB/cJ	ENSMUSG00180026247	lncRNA gene	Chr17:40862566-40874787 (+)
C3H/HeJ	ENSMUSG00175017117	lncRNA gene	Chr17:40176628-40188850 (+)
C57BL/6NJ	ENSMUSG00215053731	lncRNA gene	Chr17:39736881-39755280 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025692	lncRNA gene	Chr17:40921148-40933342 (+)
CBA/J	ENSMUSG00210052652	lncRNA gene	Chr17:39926423-39938636 (+)
DBA/2J	ENSMUSG00185029929	lncRNA gene	Chr17:42843337-42855556 (+)
FVB/NJ	ENSMUSG00205053314	lncRNA gene	Chr17:40412748-40424957 (+)
JF1/MsJ	ENSUMUG00000038369	lncRNA gene	Chr17:42464026-42476379 (+)
LP/J	ENSMUSG00230041920	lncRNA gene	Chr17:43728605-43740788 (+)
NOD/ShiLtJ	ENSMUSG00190053841	lncRNA gene	Chr17:39811917-39824086 (+)
NZO/HlLtJ	ENSMUSG00225044339	lncRNA gene	Chr17:45989703-46001866 (+)
PWK/PhJ	ENSLUMG00010046512	lncRNA gene	Chr17:39691743-39706043 (+)
SPRET/EiJ	ENSMSPG00010051101	lncRNA gene	Chr17:39906863-39919017 (+)
WSB/EiJ	ENSIUOG00005028629	lncRNA gene	Chr17:40782025-40794210 (+)

Homology

• Gene Tree
  Gm34917
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000120221 (Evidence)
• NCBI Gene
  102638326

Representative Sequences			Length	Strain/Species
genomic	102638326	NCBI Gene Model | MGI Sequence Detail	18394	C57BL/6J
transcript	NR_167720	RefSeq | MGI Sequence Detail	783	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm34917:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144740	Chr17:44416801-44416824 (+)	138 bp
Tssr144741	Chr17:44418730-44418734 (+)	2,057 bp