Gm34894 Gene Detail

Summary

• Symbol
  Gm34894
• Name
  predicted gene, 34894

• Feature Type
  lncRNA gene
• IDs
  MGI:5594053
  NCBI Gene: 102638298
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:51888451-51898647 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  399 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594053	lncRNA gene	Chr12:51888451-51905071 (-)
129S1/SvImJ	ENSMUSG00200030940	lncRNA gene	Chr12:43854636-43862018 (-)
A/J	ENSMUSG00195018350	lncRNA gene	Chr12:46420491-46427910 (-)
AKR/J	ENSMUSG00220028153	lncRNA gene	Chr12:44458893-44466312 (-)
BALB/cJ	ENSMUSG00180006202	lncRNA gene	Chr12:45412234-45419653 (-)
C3H/HeJ	ENSMUSG00175012288	lncRNA gene	Chr12:48482863-48490282 (-)
C57BL/6NJ	ENSMUSG00215021793	lncRNA gene	Chr12:44807077-44814487 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009131	lncRNA gene	Chr12:44974512-44981912 (-)
CBA/J	ENSMUSG00210009863	lncRNA gene	Chr12:44957224-44964643 (-)
DBA/2J	ENSMUSG00185014808	lncRNA gene	Chr12:46924899-46932309 (-)
FVB/NJ	ENSMUSG00205015862	lncRNA gene	Chr12:44747843-44755253 (-)
JF1/MsJ	ENSUMUG00000010799	lncRNA gene	Chr12:51078151-51085532 (-)
LP/J	ENSMUSG00230016564	lncRNA gene	Chr12:53962026-53969407 (-)
NOD/ShiLtJ	ENSMUSG00190016672	lncRNA gene	Chr12:43947654-43955077 (-)
NZO/HlLtJ	ENSMUSG00225041168	lncRNA gene	Chr12:56094093-56101503 (-)
PWK/PhJ	ENSLUMG00010016968	lncRNA gene	Chr12:45146570-45153955 (-)
SPRET/EiJ	ENSMSPG00010016248	lncRNA gene	Chr12:46461316-46468552 (-)
WSB/EiJ	ENSIUOG00005003914	lncRNA gene	Chr12:44780689-44788208 (-)

Homology

• Gene Tree
  Gm34894
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  26
• Chemically induced (other)
  1
• Gene trapped
  25
• Genomic Mutations
  1 involving Gm34894
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000120257 (Evidence)
• NCBI Gene
  102638298

Representative Sequences			Length	Strain/Species
genomic	102638298	NCBI Gene Model | MGI Sequence Detail	10197	C57BL/6J
transcript	KY467639	GenBank | ENA | DDBJ | MGI Sequence Detail	1777	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm34894:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116272	Chr12:51898550-51898566 (-)	89 bp
Tssr116271	Chr12:51898518-51898529 (-)	123 bp
Tssr116270	Chr12:51894627-51894635 (-)	4,016 bp