Gm34854 Gene Detail

Summary

• Symbol
  Gm34854
• Name
  predicted gene, 34854

• Feature Type
  lncRNA gene
• IDs
  MGI:5594013
  NCBI Gene: 102638245
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:5262276-5267593 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  315 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594013	lncRNA gene	Chr17:5250016-5274559 (-)
129S1/SvImJ	ENSMUSG00200034338	lncRNA gene	Chr17:2158284-2163565 (-)
A/J	ENSMUSG00195024054	lncRNA gene	Chr17:2151883-2157203 (-)
AKR/J	ENSMUSG00220029339	lncRNA gene	Chr17:2347346-2352661 (-)
BALB/cJ	ENSMUSG00180027786	lncRNA gene	Chr17:2163683-2169000 (-)
C3H/HeJ	ENSMUSG00175036151	lncRNA gene	Chr17:2123733-2129053 (-)
C57BL/6NJ	ENSMUSG00215029202	lncRNA gene	Chr17:2144546-2149865 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022610	lncRNA gene	Chr17:2186857-2192082 (-)
CBA/J	ENSMUSG00210039688	lncRNA gene	Chr17:2140666-2145984 (-)
DBA/2J	ENSMUSG00185024128	lncRNA gene	Chr17:2243876-2249194 (-)
FVB/NJ	ENSMUSG00205009587	lncRNA gene	Chr17:2198427-2203714 (-)
JF1/MsJ	ENSUMUG00000036952	lncRNA gene	Chr17:2223274-2228518 (-)
LP/J	ENSMUSG00230035036	lncRNA gene	Chr17:3341092-3346410 (-)
NOD/ShiLtJ	ENSMUSG00190039107	lncRNA gene	Chr17:2129192-2134445 (-)
NZO/HlLtJ	ENSMUSG00225029121	lncRNA gene	Chr17:5645064-5650382 (-)
PWK/PhJ	ENSLUMG00010019391	lncRNA gene	Chr17:2247422-2252742 (-)
SPRET/EiJ	ENSMSPG00010040761	lncRNA gene	Chr17:2172484-2176707 (-)
WSB/EiJ	ENSIUOG00005014441	lncRNA gene	Chr17:2191548-2196835 (-)

Homology

• Gene Tree
  Gm34854
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000121103 (Evidence)
• NCBI Gene
  102638245

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121103	Ensembl Gene Model | MGI Sequence Detail	5318	C57BL/6J
transcript	ENSMUST00000247135	Ensembl | MGI Sequence Detail	1968	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34854:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146298	Chr17:5267554-5267584 (-)	24 bp