Gm34833 Gene Detail

Summary

• Symbol
  Gm34833
• Name
  predicted gene, 34833

• Feature Type
  lncRNA gene
• IDs
  MGI:5593992
  NCBI Gene: 102638220
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:65384119-65405599 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  669 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593992	lncRNA gene	Chr2:65384115-65415632 (+)
129S1/SvImJ	ENSMUSG00200037225	lncRNA gene	Chr2:62456965-62478441 (+)
A/J	ENSMUSG00195023698	lncRNA gene	Chr2:62587852-62609307 (+)
AKR/J	ENSMUSG00220041659	lncRNA gene	Chr2:62540302-62561754 (+)
BALB/cJ	ENSMUSG00180042113	lncRNA gene	Chr2:62532980-62554457 (+)
C3H/HeJ	ENSMUSG00175039948	lncRNA gene	Chr2:62598391-62619846 (+)
C57BL/6NJ	ENSMUSG00215033624	lncRNA gene	Chr2:62478851-62500329 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009453	lncRNA gene	Chr2:61902053-61923614 (+)
CBA/J	ENSMUSG00210040128	lncRNA gene	Chr2:62635805-62657261 (+)
DBA/2J	ENSMUSG00185042414	lncRNA gene	Chr2:62513568-62535042 (+)
FVB/NJ	ENSMUSG00205036534	lncRNA gene	Chr2:62027555-62049005 (+)
JF1/MsJ	ENSUMUG00000006616	lncRNA gene	Chr2:62178939-62200467 (+)
LP/J	ENSMUSG00230023290	lncRNA gene	Chr2:64340750-64362224 (+)
NOD/ShiLtJ	ENSMUSG00190040217	lncRNA gene	Chr2:62581615-62603061 (+)
NZO/HlLtJ	ENSMUSG00225015458	lncRNA gene	Chr2:72070321-72091775 (+)
PWK/PhJ	ENSLUMG00010034247	lncRNA gene	Chr2:62337454-62358914 (+)
SPRET/EiJ	ENSMSPG00010038501	lncRNA gene	Chr2:63629025-63650551 (+)
WSB/EiJ	ENSIUOG00005019481	lncRNA gene	Chr2:62638602-62660052 (+)

Homology

• Gene Tree
  Gm34833
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm34833
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  8

• Ensembl
  ENSMUSG00000121160 (Evidence)
• NCBI Gene
  102638220

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121160	Ensembl Gene Model | MGI Sequence Detail	21481	C57BL/6J
transcript	ENSMUST00000356312	Ensembl | MGI Sequence Detail	1683	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm34833:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17983	Chr2:65384162-65384172 (+)	48 bp
Tssr17984	Chr2:65384193-65384200 (+)	78 bp