Gm34809 Gene Detail

Summary

• Symbol
  Gm34809
• Name
  predicted gene, 34809

• Feature Type
  lncRNA gene
• IDs
  MGI:5593968
  NCBI Gene: 102638187
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:39124464-39204734 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2483 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593968	lncRNA gene	Chr12:39111877-39204783 (-)
129S1/SvImJ	ENSMUSG00200011742	lncRNA gene	Chr12:30978390-31071246 (-)
A/J	ENSMUSG00195019668	lncRNA gene	Chr12:33648588-33741793 (-)
AKR/J	ENSMUSG00220005500	lncRNA gene	Chr12:31628032-31721222 (-)
BALB/cJ	ENSMUSG00180003600	lncRNA gene	Chr12:32635781-32728966 (-)
C3H/HeJ	ENSMUSG00175018038	lncRNA gene	Chr12:35689103-35782291 (-)
C57BL/6NJ	ENSMUSG00215013015	lncRNA gene	Chr12:32050432-32143305 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003667	lncRNA gene	Chr12:32381117-32479893 (-)
CBA/J	ENSMUSG00210016138	lncRNA gene	Chr12:32168163-32261363 (-)
DBA/2J	ENSMUSG00185020480	lncRNA gene	Chr12:34202531-34295716 (-)
FVB/NJ	ENSMUSG00205001629	lncRNA gene	Chr12:32128236-32221157 (-)
JF1/MsJ	ENSUMUG00000013548	lncRNA gene	Chr12:38386195-38479051 (-)
LP/J	ENSMUSG00230010798	lncRNA gene	Chr12:41143456-41236317 (-)
NOD/ShiLtJ	ENSMUSG00190003598	lncRNA gene	Chr12:31196342-31289456 (-)
NZO/HlLtJ	ENSMUSG00225031715	lncRNA gene	Chr12:43365354-43458225 (-)
PWK/PhJ	ENSLUMG00010012670	lncRNA gene	Chr12:32539135-32633838 (-)
SPRET/EiJ	ENSMSPG00010001954	lncRNA gene	Chr12:33343373-33456024 (-)
WSB/EiJ	ENSIUOG00005001308	lncRNA gene	Chr12:31918001-32013484 (-)

Homology

• Gene Tree
  Gm34809
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  2

• Ensembl
  ENSMUSG00000113272 (Evidence)
• NCBI Gene
  102638187

Representative Sequences			Length	Strain/Species
genomic	102638187	NCBI Gene Model | MGI Sequence Detail	80271	C57BL/6J
transcript	XR_381458	RefSeq | MGI Sequence Detail	1155	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;