Gm34648 Gene Detail

Summary

• Symbol
  Gm34648
• Name
  predicted gene, 34648
• Synonyms
  Gm43261

• Feature Type
  lncRNA gene
• IDs
  MGI:5593807
  NCBI Gene: 102637968
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:77534435-77541539 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593807	lncRNA gene	Chr5:77534419-77541603 (+)
129S1/SvImJ	ENSMUSG00200001389	lncRNA gene	Chr5:73224978-73232061 (+)
A/J	ENSMUSG00195010795	lncRNA gene	Chr5:72531365-72538448 (+)
AKR/J	ENSMUSG00220014947	lncRNA gene	Chr5:72645157-72652243 (+)
BALB/cJ	ENSMUSG00180000071	lncRNA gene	Chr5:72299244-72306329 (+)
C3H/HeJ	ENSMUSG00175004313	lncRNA gene	Chr5:74334470-74341558 (+)
C57BL/6NJ	ENSMUSG00215000468	lncRNA gene	Chr5:73111403-73118488 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003698	antisense lncRNA gene	Chr5:70393579-70400756 (+)
CAST/EiJ	ENSTCUG00005013781	lncRNA gene	Chr5:72079594-72086710 (+)
CBA/J	ENSMUSG00210000615	lncRNA gene	Chr5:73272362-73279448 (+)
DBA/2J	ENSMUSG00185016537	lncRNA gene	Chr5:75102323-75109409 (+)
FVB/NJ	ENSMUSG00205001190	lncRNA gene	Chr5:72060708-72067795 (+)
JF1/MsJ	ENSUMUG00000007225	lncRNA gene	Chr5:79595918-79603077 (+)
LP/J	ENSMUSG00230022637	lncRNA gene	Chr5:79798892-79805975 (+)
NOD/ShiLtJ	ENSMUSG00190007746	lncRNA gene	Chr5:72224472-72231557 (+)
NZO/HlLtJ	ENSMUSG00225034495	lncRNA gene	Chr5:84845991-84853074 (+)
PWK/PhJ	ENSLUMG00010007616	lncRNA gene	Chr5:72163114-72170232 (+)
SPRET/EiJ	ENSMSPG00010010114	lncRNA gene	Chr5:74193362-74200428 (+)
WSB/EiJ	ENSIUOG00005019049	lncRNA gene	Chr5:75068661-75075778 (+)

Homology

• Gene Tree
  Gm34648
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm34648
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000106828 (Evidence)
• NCBI Gene
  102637968

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106828	Ensembl Gene Model | MGI Sequence Detail	7105	C57BL/6J
transcript	ENSMUST00000362727	Ensembl | MGI Sequence Detail	392	Not Applicable

Other
Accession IDs

MGI:5663398

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm34648:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46794	Chr5:77534868-77534873 (+)	436 bp