Gm34646 Gene Detail

Summary

• Symbol
  Gm34646
• Name
  predicted gene, 34646

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5593805
  NCBI Gene: 102637965
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:75389111-75391506 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593805	protein coding gene	Chr15:75389058-75391506 (+)
129S1/SvImJ	ENSMUSG00200054088	pseudogene	Chr15:72506502-72508950 (+)
A/J	ENSMUSG00195052104	pseudogene	Chr15:72480889-72483337 (+)
AKR/J	ENSMUSG00220053243	pseudogene	Chr15:72491956-72494404 (+)
BALB/cJ	ENSMUSG00180054126	pseudogene	Chr15:72307624-72310072 (+)
C3H/HeJ	ENSMUSG00175053252	pseudogene	Chr15:72669516-72671964 (+)
C57BL/6NJ	ENSMUSG00215053586	pseudogene	Chr15:72398062-72400510 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047652	pseudogene	Chr15:72010365-72012817 (+)
CBA/J	ENSMUSG00210049175	pseudogene	Chr15:72444810-72447258 (+)
DBA/2J	ENSMUSG00185052451	pseudogene	Chr15:72423523-72425971 (+)
FVB/NJ	ENSMUSG00205052841	pseudogene	Chr15:72174199-72176647 (+)
JF1/MsJ	ENSUMUG00000056273	pseudogene	Chr15:72070882-72073336 (+)
LP/J	ENSMUSG00230052824	pseudogene	Chr15:75787537-75789985 (+)
NOD/ShiLtJ	ENSMUSG00190053499	pseudogene	Chr15:72425371-72427824 (+)
NZO/HlLtJ	ENSMUSG00225053887	pseudogene	Chr15:76090206-76092659 (+)
PWK/PhJ	ENSLUMG00010052603	pseudogene	Chr15:72352766-72355219 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050472	pseudogene	Chr15:72479503-72481956 (+)

Homology

• Gene Tree
  Gm34646
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm34646
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000116155 (Evidence)
• NCBI Gene
  102637965

Representative Sequences			Length	Strain/Species
genomic	102637965	NCBI Gene Model | MGI Sequence Detail	2396	C57BL/6J
transcript	NM_001384243	RefSeq | MGI Sequence Detail	869	ZRU/MplStud
polypeptide	NP_001371172	RefSeq | MGI Sequence Detail	140	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm34646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131663	Chr15:75389108-75389122 (+)	4 bp