Gm34593 Gene Detail

Summary

• Symbol
  Gm34593
• Name
  predicted gene, 34593

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5593752
  NCBI Gene: 102637897
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:75370623-75372569 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593752	protein coding gene	Chr15:75370597-75376195 (+)
129S1/SvImJ	ENSMUSG00200054091	pseudogene	Chr15:72488067-72490013 (+)
A/J	ENSMUSG00195052108	pseudogene	Chr15:72462455-72464401 (+)
AKR/J	ENSMUSG00220053246	pseudogene	Chr15:72473517-72475463 (+)
BALB/cJ	ENSMUSG00180054128	pseudogene	Chr15:72289189-72291135 (+)
C3H/HeJ	ENSMUSG00175053256	pseudogene	Chr15:72651082-72653028 (+)
C57BL/6NJ	ENSMUSG00215053590	pseudogene	Chr15:72379624-72381570 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047660	pseudogene	Chr15:71992097-71994042 (+)
CBA/J	ENSMUSG00210049178	pseudogene	Chr15:72426377-72428323 (+)
DBA/2J	ENSMUSG00185052459	pseudogene	Chr15:72405086-72407032 (+)
FVB/NJ	ENSMUSG00205052849	pseudogene	Chr15:72155762-72157708 (+)
JF1/MsJ	ENSUMUG00000056281	pseudogene	Chr15:72030158-72032104 (+)
LP/J	ENSMUSG00230052833	pseudogene	Chr15:75769099-75771045 (+)
NOD/ShiLtJ	ENSMUSG00190053505	pseudogene	Chr15:72406911-72408857 (+)
NZO/HlLtJ	ENSMUSG00225053918	pseudogene	Chr15:76071747-76073693 (+)
PWK/PhJ	ENSLUMG00010052611	pseudogene	Chr15:72310080-72312026 (+)
SPRET/EiJ	ENSMSPG00010050714	pseudogene	Chr15:73993289-73995236 (+)
WSB/EiJ	ENSIUOG00005050480	pseudogene	Chr15:72436749-72438692 (+)

Homology

• Gene Tree
  Gm34593
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm34593
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000116222 (Evidence)
• NCBI Gene
  102637897

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116222	Ensembl Gene Model | MGI Sequence Detail	1947	C57BL/6J
transcript	ENSMUST00000230951	Ensembl | MGI Sequence Detail	420	Not Applicable
polypeptide	NP_001371158	RefSeq | MGI Sequence Detail	140	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm34593:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131661	Chr15:75370567-75370574 (+)	-52 bp
Tssr131662	Chr15:75370586-75370608 (+)	-26 bp