Gm34590 Gene Detail

Summary

• Symbol
  Gm34590
• Name
  predicted gene, 34590

• Feature Type
  lncRNA gene
• IDs
  MGI:5593749
  NCBI Gene: 102637894
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:36938239-36963946 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  822 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593749	lncRNA gene	Chr15:36892812-36963946 (+)
129S1/SvImJ	ENSMUSG00200028406	lncRNA gene	Chr15:33950189-33960994 (+)
A/J	ENSMUSG00195036407	lncRNA gene	Chr15:33877938-33888689 (+)
AKR/J	ENSMUSG00220029218	lncRNA gene	Chr15:33791885-33802633 (+)
BALB/cJ	ENSMUSG00180032673	lncRNA gene	Chr15:33839902-33850645 (+)
C3H/HeJ	ENSMUSG00175027329	lncRNA gene	Chr15:34044193-34054934 (+)
C57BL/6NJ	ENSMUSG00215020899	lncRNA gene	Chr15:33852050-33862791 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011425	lncRNA gene	Chr15:33878976-33889819 (+)
CBA/J	ENSMUSG00210018025	lncRNA gene	Chr15:33958620-33969362 (+)
DBA/2J	ENSMUSG00185034225	lncRNA gene	Chr15:33939459-33950200 (+)
FVB/NJ	ENSMUSG00205035281	lncRNA gene	Chr15:33846382-33857130 (+)
JF1/MsJ	ENSUMUG00000035913	lncRNA gene	Chr15:33826541-33837346 (+)
LP/J	ENSMUSG00230012931	lncRNA gene	Chr15:37331409-37342214 (+)
NOD/ShiLtJ	ENSMUSG00190030476	lncRNA gene	Chr15:33920706-33931453 (+)
NZO/HlLtJ	ENSMUSG00225032134	lncRNA gene	Chr15:37630915-37641656 (+)
PWK/PhJ	ENSLUMG00010034162	lncRNA gene	Chr15:34000778-34011618 (+)
SPRET/EiJ	ENSMSPG00010013839	lncRNA gene	Chr15:34645633-34655934 (+)
WSB/EiJ	ENSIUOG00005033201	lncRNA gene	Chr15:33960386-33971128 (+)

Homology

• Gene Tree
  Gm34590
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  29
• Chemically induced (other)
  1
• Gene trapped
  28
• Genomic Mutations
  1 involving Gm34590
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  76
• RefSeq
  9

• Ensembl
  ENSMUSG00000115333 (Evidence)
• NCBI Gene
  102637894

Representative Sequences			Length	Strain/Species
genomic	102637894	NCBI Gene Model | MGI Sequence Detail	25708	C57BL/6J
transcript	XR_001781635	RefSeq | MGI Sequence Detail	3304	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9