Gm34586 Gene Detail

Summary

• Symbol
  Gm34586
• Name
  predicted gene, 34586

• Feature Type
  lncRNA gene
• IDs
  MGI:5593745
  NCBI Gene: 102637890
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:113797339-113823083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1116 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593745	lncRNA gene	Chr13:113797266-113823083 (+)
129S1/SvImJ	ENSMUSG00200032996	lncRNA gene	Chr13:108273422-108287649 (+)
A/J	ENSMUSG00195013569	lncRNA gene	Chr13:108770311-108783574 (+)
AKR/J	ENSMUSG00220033318	lncRNA gene	Chr13:107225905-107240128 (+)
BALB/cJ	ENSMUSG00180030561	lncRNA gene	Chr13:109369902-109384125 (+)
C3H/HeJ	ENSMUSG00175028559	lncRNA gene	Chr13:109447475-109461707 (+)
C57BL/6NJ	ENSMUSG00215024197	lncRNA gene	Chr13:109469439-109483662 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026953	lncRNA gene	Chr13:108508373-108522037 (+)
CBA/J	ENSMUSG00210010732	lncRNA gene	Chr13:108795538-108809761 (+)
DBA/2J	ENSMUSG00185030992	lncRNA gene	Chr13:112543747-112557975 (+)
FVB/NJ	ENSMUSG00205007241	lncRNA gene	Chr13:108222167-108235428 (+)
JF1/MsJ	ENSUMUG00000019472	lncRNA gene	Chr13:111997824-112011085 (+)
LP/J	ENSMUSG00230012197	lncRNA gene	Chr13:122742314-122756541 (+)
NOD/ShiLtJ	ENSMUSG00190020842	lncRNA gene	Chr13:109068201-109082428 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010737	lncRNA gene	Chr13:108039547-108053736 (+)
SPRET/EiJ	ENSMSPG00010017979	lncRNA gene	Chr13:109756157-109769181 (+)
WSB/EiJ	ENSIUOG00005009626	lncRNA gene	Chr13:108232268-108246482 (+)

Homology

• Gene Tree
  Gm34586
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  4

• Ensembl
  ENSMUSG00000114417 (Evidence)
• NCBI Gene
  102637890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114417	Ensembl Gene Model | MGI Sequence Detail	25745	C57BL/6J
transcript	ENSMUST00000339138	Ensembl | MGI Sequence Detail	1504	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34586:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121187	Chr13:113797358-113797392 (+)	36 bp