Gm34552 Gene Detail

Summary

• Symbol
  Gm34552
• Name
  predicted gene, 34552

• Feature Type
  lncRNA gene
• IDs
  MGI:5593711
  NCBI Gene: 102637845
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:74360903-74363936 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593711	lncRNA gene	Chr12:74360531-74363958 (-)
129S1/SvImJ	ENSMUSG00200032128	lncRNA gene	Chr12:66285025-66287914 (-)
A/J	ENSMUSG00195015185	lncRNA gene	Chr12:68987942-68990833 (-)
AKR/J	ENSMUSG00220015383	lncRNA gene	Chr12:66783574-66786538 (-)
BALB/cJ	ENSMUSG00180036067	lncRNA gene	Chr12:67978758-67981721 (-)
C3H/HeJ	ENSMUSG00175029356	lncRNA gene	Chr12:71113600-71116495 (-)
C57BL/6NJ	ENSMUSG00215034387	lncRNA gene	Chr12:67354559-67357521 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038058	lncRNA gene	Chr12:67303311-67306276 (-)
CBA/J	ENSMUSG00210030572	lncRNA gene	Chr12:67541040-67543930 (-)
DBA/2J	ENSMUSG00185004970	lncRNA gene	Chr12:69443997-69446959 (-)
FVB/NJ	ENSMUSG00205037223	lncRNA gene	Chr12:67171852-67174830 (-)
JF1/MsJ	ENSUMUG00000023340	lncRNA gene	Chr12:73412851-73415883 (-)
LP/J	ENSMUSG00230021903	lncRNA gene	Chr12:76412527-76415416 (-)
NOD/ShiLtJ	ENSMUSG00190013045	lncRNA gene	Chr12:66609620-66612583 (-)
NZO/HlLtJ	ENSMUSG00225038693	lncRNA gene	Chr12:78466927-78469816 (-)
PWK/PhJ	ENSLUMG00010033163	lncRNA gene	Chr12:67473790-67476719 (-)
SPRET/EiJ	ENSMSPG00010030461	lncRNA gene	Chr12:69190624-69193536 (-)
WSB/EiJ	ENSIUOG00005013216	lncRNA gene	Chr12:67241493-67244455 (-)

Homology

• Gene Tree
  Gm34552
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm34552
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000113031 (Evidence)
• NCBI Gene
  102637845

Representative Sequences			Length	Strain/Species
genomic	102637845	NCBI Gene Model | MGI Sequence Detail	3034	C57BL/6J
transcript	XR_004937630	RefSeq | MGI Sequence Detail	2185	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm34552:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116672	Chr12:74363848-74363892 (-)	66 bp