Gm34544 Gene Detail

Summary

• Symbol
  Gm34544
• Name
  predicted gene, 34544

• Feature Type
  lncRNA gene
• IDs
  MGI:5593703
  NCBI Gene: 102637834
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:71500385-71504408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593703	lncRNA gene	Chr10:71363111-71514670 (+)
129S1/SvImJ	ENSMUSG00200017682	lncRNA gene	Chr10:68058115-68213963 (+)
A/J	ENSMUSG00195006332	lncRNA gene	Chr10:68355510-68512301 (+)
AKR/J	ENSMUSG00220029939	lncRNA gene	Chr10:68024225-68171332 (+)
BALB/cJ	ENSMUSG00180007902	lncRNA gene	Chr10:68389944-68541510 (+)
C3H/HeJ	ENSMUSG00175013012	lncRNA gene	Chr10:68230707-68387657 (+)
C57BL/6NJ	ENSMUSG00215004161	lncRNA gene	Chr10:67999316-68150864 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027535	lncRNA gene	Chr10:67935262-68066197 (+)
CBA/J	ENSMUSG00210009854	lncRNA gene	Chr10:68105355-68256928 (+)
DBA/2J	ENSMUSG00185021079	lncRNA gene	Chr10:68460286-68611860 (+)
FVB/NJ	ENSMUSG00205007916	lncRNA gene	Chr10:68196160-68347105 (+)
JF1/MsJ	ENSUMUG00000023504	lncRNA gene	Chr10:69624333-69750989 (+)
LP/J	ENSMUSG00230019707	lncRNA gene	Chr10:70230254-70381811 (+)
NOD/ShiLtJ	ENSMUSG00190008100	lncRNA gene	Chr10:68454648-68589256 (+)
NZO/HlLtJ	ENSMUSG00225048511	lncRNA gene	Chr10:74526461-74678039 (+)
PWK/PhJ	ENSLUMG00010008024	lncRNA gene	Chr10:68040340-68190325 (+)
SPRET/EiJ	ENSMSPG00010024366	lncRNA gene	Chr10:69737172-69872761 (+)
WSB/EiJ	ENSIUOG00005034238	lncRNA gene	Chr10:67962557-68114448 (+)

Homology

• Gene Tree
  Gm34544
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm34544
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000112126 (Evidence)
• NCBI Gene
  102637834

Representative Sequences			Length	Strain/Species
genomic	102637834	NCBI Gene Model | MGI Sequence Detail	4024	C57BL/6J
transcript	XR_380567	RefSeq | MGI Sequence Detail	650	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm34544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3244	Chr10:71498551-71498554 (+)	-1,832 bp