Gm34499 Gene Detail

Summary

• Symbol
  Gm34499
• Name
  predicted gene, 34499

• Feature Type
  lncRNA gene
• IDs
  MGI:5593658
  NCBI Gene: 102637772
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:46458572-46465145 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593658	lncRNA gene	Chr14:46458549-46477978 (+)
129S1/SvImJ	ENSMUSG00200016716	lncRNA gene	Chr14:35243610-35251884 (+)
A/J	ENSMUSG00195025931	lncRNA gene	Chr14:35472281-35480557 (+)
AKR/J	ENSMUSG00220039604	lncRNA gene	Chr14:34851311-34859569 (+)
BALB/cJ	ENSMUSG00180045542	lncRNA gene	Chr14:35075958-35084234 (+)
C3H/HeJ	ENSMUSG00175028280	lncRNA gene	Chr14:36761713-36769989 (+)
C57BL/6NJ	ENSMUSG00215040002	lncRNA gene	Chr14:35478390-35486648 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011070	lncRNA gene	Chr14:37268506-37276807 (+)
CBA/J	ENSMUSG00210043245	lncRNA gene	Chr14:35407006-35415280 (+)
DBA/2J	ENSMUSG00185015032	lncRNA gene	Chr14:40196107-40204383 (+)
FVB/NJ	ENSMUSG00205048863	lncRNA gene	Chr14:34634264-34642540 (+)
JF1/MsJ	ENSUMUG00000055878	lncRNA gene	Chr14:52254255-52262511 (+)
LP/J	ENSMUSG00230021520	lncRNA gene	Chr14:52467371-52475629 (+)
NOD/ShiLtJ	ENSMUSG00190040596	lncRNA gene	Chr14:35099051-35107325 (+)
NZO/HlLtJ	ENSMUSG00225051480	lncRNA gene	Chr14:42700893-42709161 (+)
PWK/PhJ	ENSLUMG00010042270	lncRNA gene	Chr14:34700476-34708750 (+)
SPRET/EiJ	ENSMSPG00010003125	lncRNA gene	Chr14:38030841-38039085 (+)
WSB/EiJ	ENSIUOG00005042392	lncRNA gene	Chr14:34948084-34956372 (+)

Homology

• Gene Tree
  Gm34499
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34499
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  4

• Ensembl
  ENSMUSG00000120332 (Evidence)
• NCBI Gene
  102637772

Representative Sequences			Length	Strain/Species
genomic	102637772	NCBI Gene Model | MGI Sequence Detail	6574	C57BL/6J
transcript	XR_383397	RefSeq | MGI Sequence Detail	1008	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34499:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125226	Chr14:46458562-46458581 (+)	0 bp
Tssr125227	Chr14:46458596-46458609 (+)	31 bp