Gm34455 Gene Detail

Summary

• Symbol
  Gm34455
• Name
  predicted gene, 34455

• Feature Type
  lncRNA gene
• IDs
  MGI:5593614
  NCBI Gene: 102637715
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr17:26686628-26723344 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1099 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593614	lncRNA gene	Chr17:26686205-26723912 (-)
129S1/SvImJ	ENSMUSG00200054164	lncRNA gene	Chr17:22130565-22166221 (-)
A/J	ENSMUSG00195054459	lncRNA gene	Chr17:23151091-23186780 (-)
AKR/J	ENSMUSG00220053484	lncRNA gene	Chr17:22194560-22230218 (-)
BALB/cJ	ENSMUSG00180050696	lncRNA gene	Chr17:22428653-22464301 (-)
C3H/HeJ	ENSMUSG00175053932	lncRNA gene	Chr17:22186820-22222469 (-)
C57BL/6NJ	ENSMUSG00215054256	lncRNA gene	Chr17:22196175-22231813 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051698	lncRNA gene	Chr17:22789851-22826161 (-)
CBA/J	ENSMUSG00210051054	lncRNA gene	Chr17:22025683-22061332 (-)
DBA/2J	ENSMUSG00185054859	lncRNA gene	Chr17:24239271-24274959 (-)
FVB/NJ	ENSMUSG00205052853	lncRNA gene	Chr17:22497980-22533632 (-)
JF1/MsJ	ENSUMUG00000057681	lncRNA gene	Chr17:23692436-23728745 (-)
LP/J	ENSMUSG00230055100	lncRNA gene	Chr17:25635076-25670728 (-)
NOD/ShiLtJ	ENSMUSG00190054490	lncRNA gene	Chr17:22128001-22163801 (-)
NZO/HlLtJ	ENSMUSG00225054427	lncRNA gene	Chr17:27558351-27594039 (-)
PWK/PhJ	ENSLUMG00010053453	lncRNA gene	Chr17:21608101-21644404 (-)
SPRET/EiJ	ENSMSPG00010050087	lncRNA gene	Chr17:22934382-22968150 (-)
WSB/EiJ	ENSIUOG00005051911	lncRNA gene	Chr17:22885199-22920838 (-)

Homology

• Gene Tree
  Gm34455
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  5

• Ensembl
  ENSMUSG00000118107 (Evidence)
• NCBI Gene
  102637715

Representative Sequences			Length	Strain/Species
genomic	102637715	NCBI Gene Model | MGI Sequence Detail	36717	C57BL/6J
transcript	XR_876691	RefSeq | MGI Sequence Detail	4515	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34455:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146943	Chr17:26725222-26725244 (-)	-1,889 bp
Tssr146942	Chr17:26725146-26725162 (-)	-1,810 bp
Tssr146941	Chr17:26725118-26725140 (-)	-1,785 bp
Tssr146940	Chr17:26724960-26724971 (-)	-1,622 bp
Tssr146939	Chr17:26724929-26724941 (-)	-1,591 bp
Tssr146938	Chr17:26723301-26723314 (-)	36 bp
Tssr146937	Chr17:26722066-26722075 (-)	1,273 bp
Tssr146936	Chr17:26709889-26709892 (-)	13,453 bp