Gm34424 Gene Detail

Summary

• Symbol
  Gm34424
• Name
  predicted gene, 34424

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5593583
  NCBI Gene: 102637673
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:61440697-61441478 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593583	lncRNA gene	Chr9:61417005-61441529 (+)
129S1/SvImJ	ENSMUSG00200035787	pseudogene	Chr9:58531903-58556443 (+)
A/J	ENSMUSG00195042365	pseudogene	Chr9:58237538-58262126 (+)
AKR/J	ENSMUSG00220032083	pseudogene	Chr9:58387542-58412077 (+)
BALB/cJ	ENSMUSG00180020013	pseudogene	Chr9:58365077-58389649 (+)
C3H/HeJ	ENSMUSG00175023141	pseudogene	Chr9:58369244-58393834 (+)
C57BL/6NJ	ENSMUSG00215035932	pseudogene	Chr9:58352245-58376803 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022478	pseudogene	Chr9:58282569-58309002 (+)
CBA/J	ENSMUSG00210042462	pseudogene	Chr9:58465595-58490173 (+)
DBA/2J	ENSMUSG00185044115	pseudogene	Chr9:58491263-58515820 (+)
FVB/NJ	ENSMUSG00205043977	pseudogene	Chr9:58806609-58831192 (+)
JF1/MsJ	ENSUMUG00000051878	pseudogene	Chr9:58523390-58548134 (+)
LP/J	ENSMUSG00230039553	pseudogene	Chr9:58731319-58755863 (+)
NOD/ShiLtJ	ENSMUSG00190045626	pseudogene	Chr9:58566335-58590927 (+)
NZO/HlLtJ	ENSMUSG00225028404	pseudogene	Chr9:58792339-58816920 (+)
PWK/PhJ	ENSLUMG00010039637	pseudogene	Chr9:58480380-58505093 (+)
SPRET/EiJ	ENSMSPG00010029261	pseudogene	Chr9:59569871-59592840 (+)
WSB/EiJ	ENSIUOG00005042859	pseudogene	Chr9:57966705-57991259 (+)

Homology

• Gene Tree
  Gm34424
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000111381 (Evidence)
• NCBI Gene
  102637673

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111381	Ensembl Gene Model | MGI Sequence Detail	782	C57BL/6J
transcript	ENSMUST00000213400	Ensembl | MGI Sequence Detail	782	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;