Gm34417 Pseudogene Detail

Summary

• Symbol
  Gm34417
• Name
  predicted gene, 34417

• Feature Type
  pseudogene
• IDs
  MGI:5593576
  NCBI Gene: 102637663
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:101809964-101810450 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593576	pseudogene	Chr14:101789998-101811569 (-)
129S1/SvImJ	ENSMUSG00200019713	pseudogene	Chr14:90360133-90360619 (-)
A/J	ENSMUSG00195019606	pseudogene	Chr14:90491715-90492201 (-)
AKR/J	ENSMUSG00220002517	pseudogene	Chr14:89916739-89917225 (-)
BALB/cJ	ENSMUSG00180004579	pseudogene	Chr14:89974563-89975049 (-)
C3H/HeJ	ENSMUSG00175002641	pseudogene	Chr14:91840585-91841071 (-)
C57BL/6NJ	ENSMUSG00215017895	pseudogene	Chr14:90052189-90052675 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016375	pseudogene	Chr14:91468426-91468912 (-)
CBA/J	ENSMUSG00210007739	pseudogene	Chr14:90543763-90544249 (-)
DBA/2J	ENSMUSG00185011315	pseudogene	Chr14:95727916-95728402 (-)
FVB/NJ	ENSMUSG00205014532	pseudogene	Chr14:89639374-89639860 (-)
JF1/MsJ	ENSUMUG00000013295	pseudogene	Chr14:106716807-106717293 (-)
LP/J	ENSMUSG00230004132	pseudogene	Chr14:107586856-107587342 (-)
NOD/ShiLtJ	ENSMUSG00190009657	pseudogene	Chr14:90339146-90339632 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004539	pseudogene	Chr14:89600615-89601101 (-)
SPRET/EiJ	ENSMSPG00010009769	pseudogene	Chr14:93573748-93574234 (-)
WSB/EiJ	ENSIUOG00005018654	pseudogene	Chr14:89536262-89536748 (-)

Homology

• Gene Tree
  Gm34417
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34417
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115319 (Evidence)
• NCBI Gene
  102637663

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115319	Ensembl Gene Model | MGI Sequence Detail	487	C57BL/6J
transcript	ENSMUST00000228293	Ensembl | MGI Sequence Detail	487	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130037	Chr14:101810465-101810470 (-)	-18 bp