Gm34411 Gene Detail

Summary

• Symbol
  Gm34411
• Name
  predicted gene, 34411

• Feature Type
  lncRNA gene
• IDs
  MGI:5593570
  NCBI Gene: 102637656
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:73413556-73436481 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  665 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593570	lncRNA gene	Chr5:73413556-73436481 (+)
129S1/SvImJ	ENSMUSG00200036599	lncRNA gene	Chr5:69077845-69083409 (+)
A/J	ENSMUSG00195033935	lncRNA gene	Chr5:68402093-68407665 (+)
AKR/J	ENSMUSG00220004433	lncRNA gene	Chr5:68513701-68519267 (+)
BALB/cJ	ENSMUSG00180024589	lncRNA gene	Chr5:68159126-68164695 (+)
C3H/HeJ	ENSMUSG00175030605	lncRNA gene	Chr5:70228122-70233693 (+)
C57BL/6NJ	ENSMUSG00215006388	lncRNA gene	Chr5:68993542-68999103 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006056	lincRNA gene	Chr5:66207948-66213313 (+)
CAST/EiJ	ENSTCUG00005032121	lncRNA gene	Chr5:67968114-67973679 (+)
CBA/J	ENSMUSG00210023776	lncRNA gene	Chr5:69166255-69171825 (+)
DBA/2J	ENSMUSG00185016484	lncRNA gene	Chr5:70996012-71001583 (+)
FVB/NJ	ENSMUSG00205034348	lncRNA gene	Chr5:67924641-67930209 (+)
JF1/MsJ	ENSUMUG00000007463	lncRNA gene	Chr5:75472750-75478299 (+)
LP/J	ENSMUSG00230022369	lncRNA gene	Chr5:75652178-75657744 (+)
NOD/ShiLtJ	ENSMUSG00190004400	lncRNA gene	Chr5:68094872-68100441 (+)
NZO/HlLtJ	ENSMUSG00225010486	lncRNA gene	Chr5:80722325-80727892 (+)
PWK/PhJ	ENSLUMG00010015142	lncRNA gene	Chr5:68050498-68056052 (+)
SPRET/EiJ	ENSMSPG00010035814	lncRNA gene	Chr5:70058313-70063650 (+)
WSB/EiJ	ENSIUOG00005018394	lncRNA gene	Chr5:70939881-70945442 (+)

Homology

• Gene Tree
  Gm34411
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm34411
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  71

• Ensembl
  ENSMUSG00000107087 (Evidence)
• NCBI Gene
  102637656

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107087	Ensembl Gene Model | MGI Sequence Detail	22926	C57BL/6J
transcript	ENSMUST00000333936	Ensembl | MGI Sequence Detail	1696	Not Applicable

References

• Summaries
  All 21

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm34411:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46632	Chr5:73414116-73414135 (+)	570 bp
Tssr46633	Chr5:73414299-73414311 (+)	749 bp