Gm34397 Gene Detail

Summary

• Symbol
  Gm34397
• Name
  predicted gene, 34397

• Feature Type
  lncRNA gene
• IDs
  MGI:5593556
  NCBI Gene: 102637635
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:100266255-100281711 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  831 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593556	lncRNA gene	Chr9:100266255-100289770 (-)
129S1/SvImJ	ENSMUSG00200016787	lncRNA gene	Chr9:97391896-97399597 (-)
A/J	ENSMUSG00195019402	lncRNA gene	Chr9:96634302-96641994 (-)
AKR/J	ENSMUSG00220040542	lncRNA gene	Chr9:96993108-97000799 (-)
BALB/cJ	ENSMUSG00180025241	lncRNA gene	Chr9:96951073-96958765 (-)
C3H/HeJ	ENSMUSG00175013792	lncRNA gene	Chr9:97293805-97301497 (-)
C57BL/6NJ	ENSMUSG00215032415	lncRNA gene	Chr9:97284686-97292391 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013408	lncRNA gene	Chr9:97088502-97096255 (-)
CBA/J	ENSMUSG00210015430	lncRNA gene	Chr9:97120690-97128400 (-)
DBA/2J	ENSMUSG00185012739	lncRNA gene	Chr9:97301091-97308787 (-)
FVB/NJ	ENSMUSG00205024987	lncRNA gene	Chr9:97282378-97290091 (-)
JF1/MsJ	ENSUMUG00000041963	lncRNA gene	Chr9:97101837-97109867 (-)
LP/J	ENSMUSG00230021878	lncRNA gene	Chr9:97463534-97471239 (-)
NOD/ShiLtJ	ENSMUSG00190039899	lncRNA gene	Chr9:96927178-96934892 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028015	lncRNA gene	Chr9:97069240-97077474 (-)
SPRET/EiJ	ENSMSPG00010004182	lncRNA gene	Chr9:98927054-98934891 (-)
WSB/EiJ	ENSIUOG00005024282	lncRNA gene	Chr9:96383945-96391644 (-)

Homology

• Gene Tree
  Gm34397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000111258 (Evidence)
• NCBI Gene
  102637635

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111258	Ensembl Gene Model | MGI Sequence Detail	15457	C57BL/6J
transcript	ENSMUST00000367525	Ensembl | MGI Sequence Detail	1136	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;