Gm34343 Gene Detail

Summary

• Symbol
  Gm34343
• Name
  predicted gene, 34343

• Feature Type
  lncRNA gene
• IDs
  MGI:5593502
  NCBI Gene: 102637567
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:55538892-55541743 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593502	lncRNA gene	Chr4:55532736-55637149 (+)
129S1/SvImJ	ENSMUSG00200004641	lncRNA gene	Chr4:51564043-51572544 (+)
A/J	ENSMUSG00195009024	lncRNA gene	Chr4:51982263-51990817 (+)
AKR/J	ENSMUSG00220006251	lncRNA gene	Chr4:51746908-51755466 (+)
BALB/cJ	ENSMUSG00180030638	lncRNA gene	Chr4:51576630-51585184 (+)
C3H/HeJ	ENSMUSG00175022671	lncRNA gene	Chr4:51733184-51741738 (+)
C57BL/6NJ	ENSMUSG00215028239	lncRNA gene	Chr4:51585709-51594719 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008398	lncRNA gene	Chr4:51811172-51819754 (+)
CBA/J	ENSMUSG00210006042	lncRNA gene	Chr4:51461128-51469682 (+)
DBA/2J	ENSMUSG00185019031	lncRNA gene	Chr4:51812238-51820791 (+)
FVB/NJ	ENSMUSG00205018596	lncRNA gene	Chr4:51073913-51082469 (+)
JF1/MsJ	ENSUMUG00000030183	lncRNA gene	Chr4:52024090-52033109 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190042443	lncRNA gene	Chr4:51652720-51661273 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007637	lncRNA gene	Chr4:50929310-50938367 (+)
SPRET/EiJ	ENSMSPG00010033803	lncRNA gene	Chr4:52085555-52093974 (+)
WSB/EiJ	ENSIUOG00005022067	lncRNA gene	Chr4:51437215-51445746 (+)

Homology

• Gene Tree
  Gm34343
  

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000120546 (Evidence)
• NCBI Gene
  102637567

Representative Sequences			Length	Strain/Species
genomic	102637567	NCBI Gene Model | MGI Sequence Detail	2852	C57BL/6J
transcript	XR_390583	RefSeq | MGI Sequence Detail	2484	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34343:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37341	Chr4:55540181-55540186 (+)	1,292 bp