Gm34322 Gene Detail

Summary

• Symbol
  Gm34322
• Name
  predicted gene, 34322

• Feature Type
  lncRNA gene
• IDs
  MGI:5593481
  NCBI Gene: 102637538
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:61349973-61363216 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  394 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593481	lncRNA gene	Chr9:61348825-61363231 (+)
129S1/SvImJ	ENSMUSG00200035779	lncRNA gene	Chr9:58464808-58478246 (+)
A/J	ENSMUSG00195042337	lncRNA gene	Chr9:58170285-58183723 (+)
AKR/J	ENSMUSG00220032041	lncRNA gene	Chr9:58320284-58333716 (+)
BALB/cJ	ENSMUSG00180019976	lncRNA gene	Chr9:58297854-58311288 (+)
C3H/HeJ	ENSMUSG00175023116	lncRNA gene	Chr9:58302010-58315442 (+)
C57BL/6NJ	ENSMUSG00215035848	lncRNA gene	Chr9:58285018-58298452 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022446	lncRNA gene	Chr9:58213412-58226698 (+)
CBA/J	ENSMUSG00210042406	lncRNA gene	Chr9:58398405-58411837 (+)
DBA/2J	ENSMUSG00185044085	lncRNA gene	Chr9:58424060-58437494 (+)
FVB/NJ	ENSMUSG00205043922	lncRNA gene	Chr9:58739364-58752798 (+)
JF1/MsJ	ENSUMUG00000051779	lncRNA gene	Chr9:58455467-58468677 (+)
LP/J	ENSMUSG00230039835	lncRNA gene	Chr9:58664233-58677671 (+)
NOD/ShiLtJ	ENSMUSG00190045586	lncRNA gene	Chr9:58499080-58512517 (+)
NZO/HlLtJ	ENSMUSG00225028483	lncRNA gene	Chr9:58725113-58738547 (+)
PWK/PhJ	ENSLUMG00010039557	lncRNA gene	Chr9:58412479-58425677 (+)
SPRET/EiJ	ENSMSPG00010029212	lncRNA gene	Chr9:59498664-59512344 (+)
WSB/EiJ	ENSIUOG00005042815	lncRNA gene	Chr9:57899525-57912959 (+)

Homology

• Gene Tree
  Gm34322
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000111033 (Evidence)
• NCBI Gene
  102637538

Representative Sequences			Length	Strain/Species
genomic	102637538	NCBI Gene Model | MGI Sequence Detail	13244	C57BL/6J
transcript	XR_379515	RefSeq | MGI Sequence Detail	729	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34322:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85514	Chr9:61349081-61349115 (+)	-875 bp