Gm34280 Gene Detail

Summary

• Symbol
  Gm34280
• Name
  predicted gene, 34280

• Feature Type
  lncRNA gene
• IDs
  MGI:5593439
  NCBI Gene: 102637485
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:99343504-99361984 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  655 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593439	lncRNA gene	Chr7:99340443-99363433 (+)
129S1/SvImJ	ENSMUSG00200050121	lncRNA gene	Chr7:86166981-86185456 (+)
A/J	ENSMUSG00195040351	lncRNA gene	Chr7:90672378-90690863 (+)
AKR/J	ENSMUSG00220052032	lncRNA gene	Chr7:84089014-84107493 (+)
BALB/cJ	ENSMUSG00180035766	lncRNA gene	Chr7:87345381-87363863 (+)
C3H/HeJ	ENSMUSG00175024388	lncRNA gene	Chr7:87990389-88008900 (+)
C57BL/6NJ	ENSMUSG00215036711	lncRNA gene	Chr7:87189421-87207902 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034739	lncRNA gene	Chr7:90582994-90601443 (+)
CBA/J	ENSMUSG00210025695	lncRNA gene	Chr7:87844100-87862601 (+)
DBA/2J	ENSMUSG00185056879	lncRNA gene	Chr7:92165466-92183978 (+)
FVB/NJ	ENSMUSG00205040299	lncRNA gene	Chr7:87843553-87862041 (+)
JF1/MsJ	ENSUMUG00000051293	lncRNA gene	Chr7:97071125-97089634 (+)
LP/J	ENSMUSG00230045021	lncRNA gene	Chr7:98292316-98310781 (+)
NOD/ShiLtJ	ENSMUSG00190021387	lncRNA gene	Chr7:88117078-88135541 (+)
NZO/HlLtJ	ENSMUSG00225051343	lncRNA gene	Chr7:96486783-96505215 (+)
PWK/PhJ	ENSLUMG00010050089	lncRNA gene	Chr7:86304795-86323331 (+)
SPRET/EiJ	ENSMSPG00010013077	lncRNA gene	Chr7:87552173-87570747 (+)
WSB/EiJ	ENSIUOG00005010685	lncRNA gene	Chr7:88461718-88480184 (+)

Homology

• Gene Tree
  Gm34280
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm34280
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000109559 (Evidence)
• NCBI Gene
  102637485

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109559	Ensembl Gene Model | MGI Sequence Detail	18481	C57BL/6J
transcript	ENSMUST00000208250	Ensembl | MGI Sequence Detail	2114	Not Applicable

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67