Gm34250 Gene Detail

Summary

• Symbol
  Gm34250
• Name
  predicted gene, 34250

• Feature Type
  lncRNA gene
• IDs
  MGI:5593409
  NCBI Gene: 102637444
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:45679852-45685326 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593409	lncRNA gene	Chr14:45678489-45689602 (-)
129S1/SvImJ	ENSMUSG00200016583	lncRNA gene	Chr14:34470054-34474373 (-)
A/J	ENSMUSG00195024733	lncRNA gene	Chr14:34698670-34702989 (-)
AKR/J	ENSMUSG00220038886	lncRNA gene	Chr14:34058272-34062591 (-)
BALB/cJ	ENSMUSG00180046860	lncRNA gene	Chr14:34302356-34306675 (-)
C3H/HeJ	ENSMUSG00175028070	lncRNA gene	Chr14:35988176-35992495 (-)
C57BL/6NJ	ENSMUSG00215040158	lncRNA gene	Chr14:34699322-34703641 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010418	lncRNA gene	Chr14:36503266-36507442 (-)
CBA/J	ENSMUSG00210046275	lncRNA gene	Chr14:34633505-34637824 (-)
DBA/2J	ENSMUSG00185016125	lncRNA gene	Chr14:39421393-39425712 (-)
FVB/NJ	ENSMUSG00205049296	lncRNA gene	Chr14:33853404-33857723 (-)
JF1/MsJ	ENSUMUG00000055965	lncRNA gene	Chr14:51463235-51467393 (-)
LP/J	ENSMUSG00230021770	lncRNA gene	Chr14:51691016-51695182 (-)
NOD/ShiLtJ	ENSMUSG00190039242	lncRNA gene	Chr14:34325555-34329874 (-)
NZO/HlLtJ	ENSMUSG00225050813	lncRNA gene	Chr14:41921623-41925765 (-)
PWK/PhJ	ENSLUMG00010040219	lncRNA gene	Chr14:33932288-33936454 (-)
SPRET/EiJ	ENSMSPG00010003584	lncRNA gene	Chr14:37259286-37263453 (-)
WSB/EiJ	ENSIUOG00005039545	lncRNA gene	Chr14:34167174-34171316 (-)

Homology

• Gene Tree
  Gm34250
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  16
• Chemically induced (other)
  1
• Gene trapped
  15
• Genomic Mutations
  1 involving Gm34250
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000115209 (Evidence)
• NCBI Gene
  102637444

Representative Sequences			Length	Strain/Species
genomic	102637444	NCBI Gene Model | MGI Sequence Detail	5475	C57BL/6J
transcript	XR_383393	RefSeq | MGI Sequence Detail	1646	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm34250:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128254	Chr14:45682423-45682425 (-)	2,902 bp
Tssr128253	Chr14:45679933-45679953 (-)	5,383 bp