Gm34240 Gene Detail

Summary

• Symbol
  Gm34240
• Name
  predicted gene, 34240

• Feature Type
  lncRNA gene
• IDs
  MGI:5593399
  NCBI Gene: 102637430
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:63346672-63365318 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  511 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593399	lncRNA gene	Chr3:63346672-63365318 (+)
129S1/SvImJ	ENSMUSG00200023984	lncRNA gene	Chr3:60272230-60290859 (+)
A/J	ENSMUSG00195033108	lncRNA gene	Chr3:60204923-60223588 (+)
AKR/J	ENSMUSG00220031513	lncRNA gene	Chr3:60234394-60253101 (+)
BALB/cJ	ENSMUSG00180027844	lncRNA gene	Chr3:60257983-60276705 (+)
C3H/HeJ	ENSMUSG00175008939	lncRNA gene	Chr3:60097903-60116615 (+)
C57BL/6NJ	ENSMUSG00215009117	lncRNA gene	Chr3:60541117-60559762 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005638	lincRNA gene	Chr3:57072554-57090550 (+)
CAST/EiJ	ENSTCUG00005002493	lncRNA gene	Chr3:59876890-59895565 (+)
CBA/J	ENSMUSG00210004230	lncRNA gene	Chr3:60207464-60226178 (+)
DBA/2J	ENSMUSG00185028951	lncRNA gene	Chr3:60379624-60398284 (+)
FVB/NJ	ENSMUSG00205004034	lncRNA gene	Chr3:59358796-59377466 (+)
JF1/MsJ	ENSUMUG00000003192	lncRNA gene	Chr3:60071008-60089692 (+)
LP/J	ENSMUSG00230002873	lncRNA gene	Chr3:62408899-62427524 (+)
NOD/ShiLtJ	ENSMUSG00190003296	lncRNA gene	Chr3:60640104-60658826 (+)
NZO/HlLtJ	ENSMUSG00225002967	lncRNA gene	Chr3:65011283-65029916 (+)
PWK/PhJ	ENSLUMG00010005705	lncRNA gene	Chr3:59872081-59890730 (+)
SPRET/EiJ	ENSMSPG00010008099	lncRNA gene	Chr3:60681960-60704905 (+)
WSB/EiJ	ENSIUOG00005009013	lncRNA gene	Chr3:60358994-60377660 (+)

Homology

• Gene Tree
  Gm34240
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm34240
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000104336 (Evidence)
• NCBI Gene
  102637430

Representative Sequences			Length	Strain/Species
genomic	102637430	NCBI Gene Model | MGI Sequence Detail	18647	C57BL/6J
transcript	NR_153189	RefSeq | MGI Sequence Detail	1936	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm34240:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29375	Chr3:63346665-63346685 (+)	3 bp