Gm34235 Gene Detail

Summary

• Symbol
  Gm34235
• Name
  predicted gene, 34235

• Feature Type
  lncRNA gene
• IDs
  MGI:5593394
  NCBI Gene: 102637425
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:25070230-25073857 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593394	lncRNA gene	Chr19:25070230-25073908 (-)
129S1/SvImJ	ENSMUSG00200020849	lncRNA gene	Chr19:21799658-21803328 (-)
A/J	ENSMUSG00195036080	lncRNA gene	Chr19:21937393-21941063 (-)
AKR/J	ENSMUSG00220019567	lncRNA gene	Chr19:21963978-21967634 (-)
BALB/cJ	ENSMUSG00180013568	lncRNA gene	Chr19:22275291-22278961 (-)
C3H/HeJ	ENSMUSG00175026397	lncRNA gene	Chr19:21649223-21652878 (-)
C57BL/6NJ	ENSMUSG00215029951	lncRNA gene	Chr19:21681058-21684728 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018411	lncRNA gene	Chr19:21542885-21546621 (-)
CBA/J	ENSMUSG00210015130	lncRNA gene	Chr19:21880251-21883908 (-)
DBA/2J	ENSMUSG00185026017	lncRNA gene	Chr19:22266841-22270496 (-)
FVB/NJ	ENSMUSG00205013987	lncRNA gene	Chr19:21698352-21702032 (-)
JF1/MsJ	ENSUMUG00000040074	lncRNA gene	Chr19:22474963-22484809 (-)
LP/J	ENSMUSG00230029381	lncRNA gene	Chr19:23109193-23112863 (-)
NOD/ShiLtJ	ENSMUSG00190022708	lncRNA gene	Chr19:21652257-21655927 (-)
NZO/HlLtJ	ENSMUSG00225034453	lncRNA gene	Chr19:26860084-26863754 (-)
PWK/PhJ	ENSLUMG00010035773	lncRNA gene	Chr19:21818190-21828249 (-)
SPRET/EiJ	ENSMSPG00010039163	lncRNA gene	Chr19:21834161-21837790 (-)
WSB/EiJ	ENSIUOG00005028856	lncRNA gene	Chr19:21357455-21361129 (-)

Homology

• Gene Tree
  Gm34235
  

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000120776 (Evidence)
• NCBI Gene
  102637425

Representative Sequences			Length	Strain/Species
genomic	102637425	NCBI Gene Model | MGI Sequence Detail	3628	C57BL/6J
transcript	NR_166890	RefSeq | MGI Sequence Detail	404	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34235:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158695	Chr19:25073851-25073867 (-)	-2 bp
Tssr158694	Chr19:25073819-25073834 (-)	30 bp