Gm34157 Gene Detail

Summary

• Symbol
  Gm34157
• Name
  predicted gene, 34157

• Feature Type
  lncRNA gene
• IDs
  MGI:5593316
  NCBI Gene: 102637313
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:61275884-61277783 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593316	lncRNA gene	Chr9:61221052-61277937 (-)
129S1/SvImJ	ENSMUSG00200036462	lncRNA gene	Chr9:58390164-58392168 (-)
A/J	ENSMUSG00195042474	lncRNA gene	Chr9:58096179-58098180 (-)
AKR/J	ENSMUSG00220033233	lncRNA gene	Chr9:58246258-58248260 (-)
BALB/cJ	ENSMUSG00180020205	lncRNA gene	Chr9:58223800-58225800 (-)
C3H/HeJ	ENSMUSG00175023005	lncRNA gene	Chr9:58227916-58229917 (-)
C57BL/6NJ	ENSMUSG00215034203	lncRNA gene	Chr9:58210971-58212971 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022191	lncRNA gene	Chr9:58138933-58140942 (-)
CBA/J	ENSMUSG00210043534	lncRNA gene	Chr9:58324347-58326347 (-)
DBA/2J	ENSMUSG00185043304	lncRNA gene	Chr9:58350012-58352012 (-)
FVB/NJ	ENSMUSG00205044140	lncRNA gene	Chr9:58665276-58667277 (-)
JF1/MsJ	ENSUMUG00000048106	lncRNA gene	Chr9:58380032-58382037 (-)
LP/J	ENSMUSG00230039546	lncRNA gene	Chr9:58589615-58591619 (-)
NOD/ShiLtJ	ENSMUSG00190043802	lncRNA gene	Chr9:58424990-58426991 (-)
NZO/HlLtJ	ENSMUSG00225028397	lncRNA gene	Chr9:58651030-58653031 (-)
PWK/PhJ	ENSLUMG00010040602	lncRNA gene	Chr9:58337224-58339226 (-)
SPRET/EiJ	ENSMSPG00010027373	lncRNA gene	Chr9:59424292-59426302 (-)
WSB/EiJ	ENSIUOG00005042167	lncRNA gene	Chr9:57825453-57827456 (-)

Homology

• Gene Tree
  Gm34157
  

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000120207 (Evidence)
• NCBI Gene
  102637313

Representative Sequences			Length	Strain/Species
genomic	102637313	NCBI Gene Model | MGI Sequence Detail	1900	C57BL/6J
transcript	XR_379512	RefSeq | MGI Sequence Detail	1375	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34157:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90005	Chr9:61277761-61277810 (-)	-3 bp