Gm34016 Gene Detail

Summary

• Symbol
  Gm34016
• Name
  predicted gene, 34016

• Feature Type
  lncRNA gene
• IDs
  MGI:5593175
  NCBI Gene: 102637126
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:73536689-73555455 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  601 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593175	lncRNA gene	Chr12:73536689-73555455 (-)
129S1/SvImJ	ENSMUSG00200033497	lncRNA gene	Chr12:65450075-65468903 (-)
A/J	ENSMUSG00195014574	lncRNA gene	Chr12:68147035-68165857 (-)
AKR/J	ENSMUSG00220015724	lncRNA gene	Chr12:65957669-65976427 (-)
BALB/cJ	ENSMUSG00180036510	lncRNA gene	Chr12:67146032-67164857 (-)
C3H/HeJ	ENSMUSG00175031116	lncRNA gene	Chr12:70272812-70291633 (-)
C57BL/6NJ	ENSMUSG00215035804	lncRNA gene	Chr12:66528947-66547703 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037620	lncRNA gene	Chr12:66470492-66489510 (-)
CBA/J	ENSMUSG00210030533	lncRNA gene	Chr12:66710010-66728828 (-)
DBA/2J	ENSMUSG00185005003	lncRNA gene	Chr12:68618355-68637112 (-)
FVB/NJ	ENSMUSG00205033222	lncRNA gene	Chr12:66337314-66356121 (-)
JF1/MsJ	ENSUMUG00000025498	lncRNA gene	Chr12:72584982-72603840 (-)
LP/J	ENSMUSG00230021875	lncRNA gene	Chr12:75568359-75587189 (-)
NOD/ShiLtJ	ENSMUSG00190012806	lncRNA gene	Chr12:65762602-65781444 (-)
NZO/HlLtJ	ENSMUSG00225038666	lncRNA gene	Chr12:77626438-77645197 (-)
PWK/PhJ	ENSLUMG00010034656	lncRNA gene	Chr12:66643152-66661976 (-)
SPRET/EiJ	ENSMSPG00010029621	lncRNA gene	Chr12:68340090-68359283 (-)
WSB/EiJ	ENSIUOG00005012605	lncRNA gene	Chr12:66395788-66423615 (-)

Homology

• Gene Tree
  Gm34016
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34016
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000113099 (Evidence)
• NCBI Gene
  102637126

Representative Sequences			Length	Strain/Species
genomic	102637126	NCBI Gene Model | MGI Sequence Detail	18767	C57BL/6J
transcript	NR_175331	RefSeq | MGI Sequence Detail	1395	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm34016:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116656	Chr12:73555440-73555469 (-)	0 bp