Gm33969 Gene Detail

Summary

• Symbol
  Gm33969
• Name
  predicted gene, 33969

• Feature Type
  lncRNA gene
• IDs
  MGI:5593128
  NCBI Gene: 102637064
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:97473763-97496298 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  669 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593128	lncRNA gene	Chr5:97449018-97497427 (+)
129S1/SvImJ	ENSMUSG00200010145	lncRNA gene	Chr5:91171748-91194238 (+)
A/J	ENSMUSG00195027156	lncRNA gene	Chr5:90752435-90774938 (+)
AKR/J	ENSMUSG00220012519	lncRNA gene	Chr5:90206952-90229265 (+)
BALB/cJ	ENSMUSG00180028529	lncRNA gene	Chr5:90908990-90931304 (+)
C3H/HeJ	ENSMUSG00175036033	lncRNA gene	Chr5:93012046-93034359 (+)
C57BL/6NJ	ENSMUSG00215035278	lncRNA gene	Chr5:90856404-90878935 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006099	lincRNA gene	Chr5:90345402-90367568 (+)
CAST/EiJ	ENSTCUG00005039291	lncRNA gene	Chr5:90257301-90279625 (+)
CBA/J	ENSMUSG00210036537	lncRNA gene	Chr5:91783724-91806037 (+)
DBA/2J	ENSMUSG00185038772	lncRNA gene	Chr5:94699792-94722109 (+)
FVB/NJ	ENSMUSG00205036887	lncRNA gene	Chr5:90672107-90694420 (+)
JF1/MsJ	ENSUMUG00000048479	lncRNA gene	Chr5:97639421-97661818 (+)
LP/J	ENSMUSG00230028729	lncRNA gene	Chr5:98735938-98758432 (+)
NOD/ShiLtJ	ENSMUSG00190042428	lncRNA gene	Chr5:90684754-90707263 (+)
NZO/HlLtJ	ENSMUSG00225013449	lncRNA gene	Chr5:106498365-106520674 (+)
PWK/PhJ	ENSLUMG00010031694	lncRNA gene	Chr5:89774332-89797420 (+)
SPRET/EiJ	ENSMSPG00010027980	lncRNA gene	Chr5:92632970-92656503 (+)
WSB/EiJ	ENSIUOG00005033720	lncRNA gene	Chr5:93390880-93413194 (+)

Homology

• Gene Tree
  Gm33969
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm33969
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000104717 (Evidence)
• NCBI Gene
  102637064

Representative Sequences			Length	Strain/Species
genomic	102637064	NCBI Gene Model | MGI Sequence Detail	22536	C57BL/6J
transcript	XR_389367	RefSeq | MGI Sequence Detail	388	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17