Gm33940 Gene Detail

Summary

• Symbol
  Gm33940
• Name
  predicted gene, 33940
• Synonyms
  Gm45314

• Feature Type
  lncRNA gene
• IDs
  MGI:5593099
  NCBI Gene: 102637028
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:19420237-19435254 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  587 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593099	lncRNA gene	Chr2:19418721-19435254 (+)
129S1/SvImJ	ENSMUSG00200042690	lncRNA gene	Chr2:16387160-16389572 (+)
A/J	ENSMUSG00195020048	lncRNA gene	Chr2:16465390-16467775 (+)
AKR/J	ENSMUSG00220013921	lncRNA gene	Chr2:16456286-16458670 (+)
BALB/cJ	ENSMUSG00180038251	lncRNA gene	Chr2:16508621-16511025 (+)
C3H/HeJ	ENSMUSG00175023721	lncRNA gene	Chr2:16469729-16472134 (+)
C57BL/6NJ	ENSMUSG00215031197	lncRNA gene	Chr2:16558972-16561369 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004470	lncRNA gene	Chr2:16317776-16320258 (+)
CBA/J	ENSMUSG00210003792	lncRNA gene	Chr2:16507701-16510101 (+)
DBA/2J	ENSMUSG00185040736	lncRNA gene	Chr2:16407427-16409813 (+)
FVB/NJ	ENSMUSG00205014698	lncRNA gene	Chr2:16463367-16465760 (+)
JF1/MsJ	ENSUMUG00000004478	lncRNA gene	Chr2:16374642-16377027 (+)
LP/J	ENSMUSG00230020303	lncRNA gene	Chr2:18345415-18347824 (+)
NOD/ShiLtJ	ENSMUSG00190014657	lncRNA gene	Chr2:16478662-16481059 (+)
NZO/HlLtJ	ENSMUSG00225001735	lncRNA gene	Chr2:26096016-26098413 (+)
PWK/PhJ	ENSLUMG00010034606	lncRNA gene	Chr2:16493462-16495829 (+)
SPRET/EiJ	ENSMSPG00010015450	lncRNA gene	Chr2:16945819-16948301 (+)
WSB/EiJ	ENSIUOG00005015570	lncRNA gene	Chr2:16562238-16564617 (+)

Homology

• Gene Tree
  Gm33940
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000109733 (Evidence)
• NCBI Gene
  102637028

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109733	Ensembl Gene Model | MGI Sequence Detail	15018	C57BL/6J
transcript	ENSMUST00000209205	Ensembl | MGI Sequence Detail	1638	Not Applicable

Other
Accession IDs

MGI:5791150

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;