Gm33890 Gene Detail

Summary

• Symbol
  Gm33890
• Name
  predicted gene, 33890

• Feature Type
  lncRNA gene
• IDs
  MGI:5593049
  NCBI Gene: 102636965
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:61250872-61265941 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  823 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593049	lncRNA gene	Chr17:61250865-61265981 (-)
129S1/SvImJ	ENSMUSG00200016870	lncRNA gene	Chr17:56546063-56561059 (-)
A/J	ENSMUSG00195007357	lncRNA gene	Chr17:57926676-57941677 (-)
AKR/J	ENSMUSG00220013659	lncRNA gene	Chr17:56995072-57010071 (-)
BALB/cJ	ENSMUSG00180006593	lncRNA gene	Chr17:57670644-57685642 (-)
C3H/HeJ	ENSMUSG00175007697	lncRNA gene	Chr17:56982984-56997983 (-)
C57BL/6NJ	ENSMUSG00215009220	lncRNA gene	Chr17:56625481-56640478 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019216	lncRNA gene	Chr17:57622729-57637155 (-)
CBA/J	ENSMUSG00210029551	lncRNA gene	Chr17:56775434-56790433 (-)
DBA/2J	ENSMUSG00185009655	lncRNA gene	Chr17:59626924-59641925 (-)
FVB/NJ	ENSMUSG00205007355	lncRNA gene	Chr17:57263547-57278546 (-)
JF1/MsJ	ENSUMUG00000034892	lncRNA gene	Chr17:59326550-59341530 (-)
LP/J	ENSMUSG00230029238	lncRNA gene	Chr17:60598764-60613762 (-)
NOD/ShiLtJ	ENSMUSG00190010938	lncRNA gene	Chr17:56759252-56774247 (-)
NZO/HlLtJ	ENSMUSG00225026299	lncRNA gene	Chr17:62889175-62904172 (-)
PWK/PhJ	ENSLUMG00010009746	lncRNA gene	Chr17:56580862-56595811 (-)
SPRET/EiJ	ENSMSPG00010006075	lncRNA gene	Chr17:56926882-56950497 (-)
WSB/EiJ	ENSIUOG00005024332	lncRNA gene	Chr17:57616615-57631609 (-)

Homology

• Gene Tree
  Gm33890
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000117036 (Evidence)
• NCBI Gene
  102636965

Representative Sequences			Length	Strain/Species
genomic	102636965	NCBI Gene Model | MGI Sequence Detail	15070	C57BL/6J
transcript	XR_385676	RefSeq | MGI Sequence Detail	470	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;