Gm33887 Gene Detail

Summary

• Symbol
  Gm33887
• Name
  predicted gene, 33887

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5593046
  NCBI Gene: 105244034
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:182082920-182093597 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593046	protein coding gene	Chr1:182082864-182099857 (+)
129S1/SvImJ	ENSMUSG00200023753	lncRNA gene	Chr1:179843509-179854214 (+)
A/J	ENSMUSG00195042588	lncRNA gene	Chr1:179444849-179452051 (+)
AKR/J	ENSMUSG00220021587	lncRNA gene	Chr1:178682969-178690049 (+)
BALB/cJ	ENSMUSG00180039207	lncRNA gene	Chr1:179494851-179505556 (+)
C3H/HeJ	ENSMUSG00175041028	lncRNA gene	Chr1:179670533-179681238 (+)
C57BL/6NJ	ENSMUSG00215026850	lncRNA gene	Chr1:178896275-178906980 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044273	lncRNA gene	Chr1:177422747-177429963 (+)
CBA/J	ENSMUSG00210019291	lncRNA gene	Chr1:179322802-179329882 (+)
DBA/2J	ENSMUSG00185037227	lncRNA gene	Chr1:183942214-183949295 (+)
FVB/NJ	ENSMUSG00205038462	lncRNA gene	Chr1:178373397-178380479 (+)
JF1/MsJ	ENSUMUG00000005820	lncRNA gene	Chr1:182944931-182952034 (+)
LP/J	ENSMUSG00230025202	lncRNA gene	Chr1:183502774-183513479 (+)
NOD/ShiLtJ	ENSMUSG00190034732	lncRNA gene	Chr1:179361344-179368545 (+)
NZO/HlLtJ	ENSMUSG00225011468	lncRNA gene	Chr1:187253651-187254532 (+)
PWK/PhJ	ENSLUMG00010017388	lncRNA gene	Chr1:178194911-178202140 (+)
SPRET/EiJ	ENSMSPG00010034675	lncRNA gene	Chr1:181676028-181683129 (+)
WSB/EiJ	ENSIUOG00005011763	lncRNA gene	Chr1:178544289-178551491 (+)

Homology

• Gene Tree
  Gm33887
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33887
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  14

• Ensembl
  ENSMUSG00000121042 (Evidence)
• NCBI Gene
  105244034

Representative Sequences			Length	Strain/Species
genomic	105244034	NCBI Gene Model | MGI Sequence Detail	10678	C57BL/6J
transcript	NM_001372438	RefSeq | MGI Sequence Detail	2966	ZRU/MplStud
polypeptide	NP_001359367	RefSeq | MGI Sequence Detail	641	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33887:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10543	Chr1:182082874-182082906 (+)	-30 bp
Tssr10544	Chr1:182082914-182082924 (+)	-1 bp
Tssr10545	Chr1:182082988-182083016 (+)	82 bp