Gm33847 Gene Detail

Summary

• Symbol
  Gm33847
• Name
  predicted gene, 33847
• Synonyms
  Gm43639

• Feature Type
  lncRNA gene
• IDs
  MGI:5593006
  NCBI Gene: 102636901
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:11714134-11730774 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593006	lncRNA gene	Chr5:11688495-11730830 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220002179	lncRNA gene	Chr5:7804566-7931664 (-)
BALB/cJ	ENSMUSG00180018391	lncRNA gene	Chr5:7620456-7638057 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185029950	lncRNA gene	Chr5:8164000-8180651 (-)
DBA/2J	ENSMUSG00185029961	lncRNA gene	Chr5:8718397-8735048 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000003932	lncRNA gene	Chr5:8779257-8795500 (-)
LP/J	ENSMUSG00230003519	lncRNA gene	Chr5:12724247-12740907 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225009087	lncRNA gene	Chr5:16401041-16417697 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010005218	lncRNA gene	Chr5:8060026-8075214 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm33847
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000105299 (Evidence)
• NCBI Gene
  102636901

Representative Sequences			Length	Strain/Species
genomic	102636901	NCBI Gene Model | MGI Sequence Detail	16641	C57BL/6J
transcript	XR_376772	RefSeq | MGI Sequence Detail	770	C57BL/6J

Other
Accession IDs

MGI:5663776

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;