Gm33841 Gene Detail

Summary

• Symbol
  Gm33841
• Name
  predicted gene, 33841

• Feature Type
  lncRNA gene
• IDs
  MGI:5593000
  NCBI Gene: 102636892
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:61363828-61372382 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  323 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593000	lncRNA gene	Chr2:61363828-61373222 (+)
129S1/SvImJ	ENSMUSG00200002972	lncRNA gene	Chr2:58433446-58441977 (+)
A/J	ENSMUSG00195005327	lncRNA gene	Chr2:58552858-58561389 (+)
AKR/J	ENSMUSG00220007407	lncRNA gene	Chr2:58654570-58663101 (+)
BALB/cJ	ENSMUSG00180021395	lncRNA gene	Chr2:58508616-58517148 (+)
C3H/HeJ	ENSMUSG00175013987	lncRNA gene	Chr2:58577371-58585902 (+)
C57BL/6NJ	ENSMUSG00215009150	lncRNA gene	Chr2:58562114-58570645 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022891	lncRNA gene	Chr2:57924548-57933063 (+)
CBA/J	ENSMUSG00210034665	lncRNA gene	Chr2:58603250-58611781 (+)
DBA/2J	ENSMUSG00185008705	lncRNA gene	Chr2:58455568-58464096 (+)
FVB/NJ	ENSMUSG00205021832	lncRNA gene	Chr2:58092056-58100587 (+)
JF1/MsJ	ENSUMUG00000023140	lncRNA gene	Chr2:58150023-58157902 (+)
LP/J	ENSMUSG00230001894	lncRNA gene	Chr2:60317047-60325578 (+)
NOD/ShiLtJ	ENSMUSG00190045008	lncRNA gene	Chr2:58541588-58550119 (+)
NZO/HlLtJ	ENSMUSG00225001200	lncRNA gene	Chr2:68030026-68038557 (+)
PWK/PhJ	ENSLUMG00010005667	lncRNA gene	Chr2:58311123-58319000 (+)
SPRET/EiJ	ENSMSPG00010011872	lncRNA gene	Chr2:59519391-59527951 (+)
WSB/EiJ	ENSIUOG00005028131	lncRNA gene	Chr2:58629920-58638449 (+)

Homology

• Gene Tree
  Gm33841
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33841
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000121191 (Evidence)
• NCBI Gene
  102636892

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121191	Ensembl Gene Model | MGI Sequence Detail	8555	C57BL/6J
transcript	ENSMUST00000247562	Ensembl | MGI Sequence Detail	2394	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33841:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17895	Chr2:61363826-61363843 (+)	7 bp