Gm33727 Gene Detail

Summary

• Symbol
  Gm33727
• Name
  predicted gene, 33727

• Feature Type
  lncRNA gene
• IDs
  MGI:5592886
  NCBI Gene: 102636737
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:25737563-25741539 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592886	lncRNA gene	Chr17:25716569-25741599 (+)
129S1/SvImJ	ENSMUSG00200053854	lncRNA gene	Chr17:21182474-21186598 (+)
A/J	ENSMUSG00195054492	lncRNA gene	Chr17:22200077-22204201 (+)
AKR/J	ENSMUSG00220053683	lncRNA gene	Chr17:21245930-21250055 (+)
BALB/cJ	ENSMUSG00180050872	lncRNA gene	Chr17:21480477-21484605 (+)
C3H/HeJ	ENSMUSG00175054174	lncRNA gene	Chr17:21239092-21243216 (+)
C57BL/6NJ	ENSMUSG00215054401	lncRNA gene	Chr17:21246640-21250765 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051864	lncRNA gene	Chr17:21825645-21829760 (+)
CBA/J	ENSMUSG00210051106	lncRNA gene	Chr17:21077937-21082061 (+)
DBA/2J	ENSMUSG00185053563	lncRNA gene	Chr17:23288337-23292461 (+)
FVB/NJ	ENSMUSG00205053369	lncRNA gene	Chr17:21543516-21547640 (+)
JF1/MsJ	ENSUMUG00000057336	lncRNA gene	Chr17:22738202-22742327 (+)
LP/J	ENSMUSG00230055275	lncRNA gene	Chr17:24687076-24691200 (+)
NOD/ShiLtJ	ENSMUSG00190054088	lncRNA gene	Chr17:21177065-21181189 (+)
NZO/HlLtJ	ENSMUSG00225054648	lncRNA gene	Chr17:26607426-26611550 (+)
PWK/PhJ	ENSLUMG00010053294	lncRNA gene	Chr17:20655894-20660019 (+)
SPRET/EiJ	ENSMSPG00010050715	lncRNA gene	Chr17:21980253-21984372 (+)
WSB/EiJ	ENSIUOG00005051228	lncRNA gene	Chr17:21920063-21924182 (+)

Homology

• Gene Tree
  Gm33727
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000117437 (Evidence)
• NCBI Gene
  102636737

Representative Sequences			Length	Strain/Species
genomic	102636737	NCBI Gene Model | MGI Sequence Detail	3977	C57BL/6J
transcript	NR_155500	RefSeq | MGI Sequence Detail	492	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm33727:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143164	Chr17:25737442-25737458 (+)	-113 bp