Gm33700 Pseudogene Detail

Summary

• Symbol
  Gm33700
• Name
  predicted gene, 33700

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5592859
  NCBI Gene: 102636701
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:98770264-98770960 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592859	pseudogene	Chr9:98770126-98771096 (+)
129S1/SvImJ	ENSMUSG00200016677	pseudogene	Chr9:95890490-95891186 (+)
A/J	ENSMUSG00195019028	pseudogene	Chr9:95124501-95125197 (+)
AKR/J	ENSMUSG00220039675	pseudogene	Chr9:95501995-95502691 (+)
BALB/cJ	ENSMUSG00180025182	pseudogene	Chr9:95444113-95444809 (+)
C3H/HeJ	ENSMUSG00175012722	pseudogene	Chr9:95786950-95787646 (+)
C57BL/6NJ	ENSMUSG00215030823	pseudogene	Chr9:95788014-95788710 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013451	pseudogene	Chr9:95611060-95611756 (+)
CBA/J	ENSMUSG00210015532	pseudogene	Chr9:95625251-95625947 (+)
DBA/2J	ENSMUSG00185012158	pseudogene	Chr9:95811523-95812219 (+)
FVB/NJ	ENSMUSG00205031584	pseudogene	Chr9:95817741-95818437 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230022106	pseudogene	Chr9:95979525-95980221 (+)
NOD/ShiLtJ	ENSMUSG00190040273	pseudogene	Chr9:95446824-95447520 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027319	pseudogene	Chr9:95566916-95567612 (+)
SPRET/EiJ	ENSMSPG00010003999	pseudogene	Chr9:97370764-97371460 (+)
WSB/EiJ	ENSIUOG00005025039	pseudogene	Chr9:94886471-94887167 (+)

Homology

• Gene Tree
  Gm33700
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33700
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000110788 (Evidence)
• NCBI Gene
  102636701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110788	Ensembl Gene Model | MGI Sequence Detail	697	C57BL/6J
transcript	ENSMUST00000215123	Ensembl | MGI Sequence Detail	697	Not Applicable
polypeptide	XP_006511673	RefSeq | MGI Sequence Detail	231	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;