Gm33699 Gene Detail

Summary

• Symbol
  Gm33699
• Name
  predicted gene, 33699

• Feature Type
  lncRNA gene
• IDs
  MGI:5592858
  NCBI Gene: 102636699
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:60939513-60964205 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  833 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592858	lncRNA gene	Chr9:60939483-60966619 (+)
129S1/SvImJ	ENSMUSG00200035999	lncRNA gene	Chr9:58050605-58077137 (+)
A/J	ENSMUSG00195040870	lncRNA gene	Chr9:57759804-57786888 (+)
AKR/J	ENSMUSG00220033817	lncRNA gene	Chr9:57909031-57936162 (+)
BALB/cJ	ENSMUSG00180018907	lncRNA gene	Chr9:57887255-57914315 (+)
C3H/HeJ	ENSMUSG00175022891	lncRNA gene	Chr9:57891600-57918675 (+)
C57BL/6NJ	ENSMUSG00215033768	lncRNA gene	Chr9:57874425-57901493 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021835	lncRNA gene	Chr9:57802733-57829624 (+)
CBA/J	ENSMUSG00210041541	lncRNA gene	Chr9:57988415-58015484 (+)
DBA/2J	ENSMUSG00185043879	lncRNA gene	Chr9:58013527-58040591 (+)
FVB/NJ	ENSMUSG00205042968	lncRNA gene	Chr9:58328949-58356022 (+)
JF1/MsJ	ENSUMUG00000051437	lncRNA gene	Chr9:58044646-58071790 (+)
LP/J	ENSMUSG00230040270	lncRNA gene	Chr9:58250120-58276643 (+)
NOD/ShiLtJ	ENSMUSG00190044401	lncRNA gene	Chr9:58083133-58110213 (+)
NZO/HlLtJ	ENSMUSG00225028568	lncRNA gene	Chr9:58308294-58335363 (+)
PWK/PhJ	ENSLUMG00010040204	lncRNA gene	Chr9:58002999-58030085 (+)
SPRET/EiJ	ENSMSPG00010029479	lncRNA gene	Chr9:59074598-59109516 (+)
WSB/EiJ	ENSIUOG00005040899	lncRNA gene	Chr9:57489180-57516240 (+)

Homology

• Gene Tree
  Gm33699
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  3

• Ensembl
  ENSMUSG00000111147 (Evidence)
• NCBI Gene
  102636699

Representative Sequences			Length	Strain/Species
genomic	102636699	NCBI Gene Model | MGI Sequence Detail	24693	C57BL/6J
transcript	XR_001779190	RefSeq | MGI Sequence Detail	2325	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33699:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85498	Chr9:60961919-60961933 (+)	22,413 bp