Gm33666 Pseudogene Detail

Summary

• Symbol
  Gm33666
• Name
  predicted gene, 33666

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5592825
  NCBI Gene: 102636661
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:100195052-100195332 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592825	pseudogene	Chr15:100192522-100195507 (+)
129S1/SvImJ	ENSMUSG00200052450	pseudogene	Chr15:97400908-97401188 (+)
A/J	ENSMUSG00195045562	pseudogene	Chr15:97278394-97278674 (+)
AKR/J	ENSMUSG00220049244	pseudogene	Chr15:97271621-97271901 (+)
BALB/cJ	ENSMUSG00180048577	pseudogene	Chr15:97176766-97177046 (+)
C3H/HeJ	ENSMUSG00175046669	pseudogene	Chr15:97458390-97458670 (+)
C57BL/6NJ	ENSMUSG00215051497	pseudogene	Chr15:97233470-97233750 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046776	pseudogene	Chr15:96711751-96712031 (+)
CBA/J	ENSMUSG00210032055	pseudogene	Chr15:97233627-97233907 (+)
DBA/2J	ENSMUSG00185043375	pseudogene	Chr15:97277988-97278268 (+)
FVB/NJ	ENSMUSG00205048884	pseudogene	Chr15:96982485-96982765 (+)
JF1/MsJ	ENSUMUG00000057621	pseudogene	Chr15:96735015-96735295 (+)
LP/J	ENSMUSG00230040905	pseudogene	Chr15:100624255-100624535 (+)
NOD/ShiLtJ	ENSMUSG00190049843	pseudogene	Chr15:97253043-97253323 (+)
NZO/HlLtJ	ENSMUSG00225043120	pseudogene	Chr15:100870016-100870296 (+)
PWK/PhJ	ENSLUMG00010049565	pseudogene	Chr15:96965092-96965372 (+)
SPRET/EiJ	ENSMSPG00010049831	pseudogene	Chr15:98761605-98761885 (+)
WSB/EiJ	ENSIUOG00005041937	pseudogene	Chr15:97364509-97364789 (+)

Homology

• Gene Tree
  Gm33666
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm33666
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000116182 (Evidence)
• NCBI Gene
  102636661

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116182	Ensembl Gene Model | MGI Sequence Detail	281	C57BL/6J
transcript	ENSMUST00000230632	Ensembl | MGI Sequence Detail	281	Not Applicable
polypeptide	XP_036015558	RefSeq | MGI Sequence Detail	124	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm33666:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133114	Chr15:100195004-100195037 (+)	-31 bp