Gm33609 Gene Detail

Summary

• Symbol
  Gm33609
• Name
  predicted gene, 33609
• Synonyms
  Gm43146

• Feature Type
  lncRNA gene
• IDs
  MGI:5592768
  NCBI Gene: 102636587
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:97279630-97297708 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  603 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592768	lncRNA gene	Chr5:97258944-97357574 (+)
129S1/SvImJ	ENSMUSG00200009605	lncRNA gene	Chr5:90989603-90996402 (+)
A/J	ENSMUSG00195026409	lncRNA gene	Chr5:90563206-90570005 (+)
AKR/J	ENSMUSG00220012279	lncRNA gene	Chr5:90015121-90021920 (+)
BALB/cJ	ENSMUSG00180028007	lncRNA gene	Chr5:90712886-90719685 (+)
C3H/HeJ	ENSMUSG00175035874	lncRNA gene	Chr5:92815961-92822762 (+)
C57BL/6NJ	ENSMUSG00215033047	lncRNA gene	Chr5:90673504-90680326 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006097	lincRNA gene	Chr5:90169973-90176764 (+)
CAST/EiJ	ENSTCUG00005037351	lncRNA gene	Chr5:90072344-90079125 (+)
CBA/J	ENSMUSG00210034834	lncRNA gene	Chr5:91587669-91594470 (+)
DBA/2J	ENSMUSG00185037445	lncRNA gene	Chr5:94503695-94510496 (+)
FVB/NJ	ENSMUSG00205031396	lncRNA gene	Chr5:90486201-90493000 (+)
JF1/MsJ	ENSUMUG00000048217	lncRNA gene	Chr5:97447825-97454648 (+)
LP/J	ENSMUSG00230028600	lncRNA gene	Chr5:98553839-98560638 (+)
NOD/ShiLtJ	ENSMUSG00190041410	lncRNA gene	Chr5:90495595-90502394 (+)
NZO/HlLtJ	ENSMUSG00225013384	lncRNA gene	Chr5:106302294-106309093 (+)
PWK/PhJ	ENSLUMG00010029986	lncRNA gene	Chr5:89592883-89599709 (+)
SPRET/EiJ	ENSMSPG00010027421	lncRNA gene	Chr5:92452890-92459743 (+)
WSB/EiJ	ENSIUOG00005031895	lncRNA gene	Chr5:93208762-93215563 (+)

Homology

• Gene Tree
  Gm33609
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm33609
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  72
• RefSeq
  1

• Ensembl
  ENSMUSG00000104736 (Evidence)
• NCBI Gene
  102636587

Representative Sequences			Length	Strain/Species
genomic	102636587	NCBI Gene Model | MGI Sequence Detail	18079	C57BL/6J
transcript	AK040435	GenBank | ENA | DDBJ | MGI Sequence Detail	2695	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663283

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17